PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50701-50750 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 38.4615 | 35.7143 | 41.6667 | 98.0645 | 5 | 9 | 5 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | SNP | ti | map_l100_m0_e0 | hetalt | 52.6316 | 35.7143 | 100.0000 | 93.4211 | 5 | 9 | 5 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 47.8883 | 35.6275 | 73.0159 | 53.4483 | 88 | 159 | 138 | 51 | 50 | 98.0392 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 35.6164 | 0.0000 | 0.0000 | 26 | 47 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 51.8519 | 35.5932 | 95.4545 | 76.8421 | 21 | 38 | 21 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | map_l100_m1_e0 | het | 45.4208 | 35.5932 | 62.7451 | 82.9431 | 21 | 38 | 32 | 19 | 5 | 26.3158 | |
| anovak-vg | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 35.5769 | 0.0000 | 0.0000 | 481 | 871 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 38.0404 | 35.5733 | 40.8751 | 72.9582 | 757 | 1371 | 766 | 1108 | 1004 | 90.6137 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 50.0650 | 35.5685 | 84.5070 | 87.6843 | 122 | 221 | 120 | 22 | 19 | 86.3636 | |
| gduggal-snapplat | INDEL | I6_15 | HG002complexvar | hetalt | 51.2055 | 35.5683 | 91.3793 | 60.4433 | 435 | 788 | 424 | 40 | 34 | 85.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 40.5494 | 35.4887 | 47.2934 | 60.0683 | 236 | 429 | 332 | 370 | 282 | 76.2162 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e1 | homalt | 52.3802 | 35.4870 | 99.9697 | 82.0942 | 3301 | 6001 | 3301 | 1 | 0 | 0.0000 | |
| anovak-vg | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 35.4839 | 0.0000 | 0.0000 | 11 | 20 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_siren | hetalt | 52.3810 | 35.4839 | 100.0000 | 87.6404 | 11 | 20 | 11 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 49.9618 | 35.4839 | 84.3972 | 87.4219 | 121 | 220 | 119 | 22 | 19 | 86.3636 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | hetalt | 52.3810 | 35.4839 | 100.0000 | 73.6842 | 11 | 20 | 5 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 46.2359 | 35.4839 | 66.3366 | 79.0456 | 66 | 120 | 67 | 34 | 34 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 51.7828 | 35.4521 | 96.0081 | 54.3492 | 2415 | 4397 | 2862 | 119 | 117 | 98.3193 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 49.6165 | 35.4286 | 82.7586 | 60.8108 | 62 | 113 | 24 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 50.4742 | 35.4167 | 87.8049 | 93.6923 | 17 | 31 | 36 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 41.1142 | 35.4136 | 49.0020 | 38.2625 | 976 | 1780 | 982 | 1022 | 950 | 92.9550 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 51.6425 | 35.4076 | 95.3714 | 40.1032 | 899 | 1640 | 886 | 43 | 33 | 76.7442 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | * | 50.9554 | 35.3982 | 90.9091 | 94.0860 | 40 | 73 | 40 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 51.6493 | 35.3933 | 95.5224 | 83.2080 | 63 | 115 | 64 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 43.2688 | 35.3933 | 55.6522 | 57.2491 | 63 | 115 | 64 | 51 | 38 | 74.5098 | |
| gduggal-snapplat | INDEL | D6_15 | map_siren | homalt | 51.8357 | 35.3846 | 96.8750 | 91.1846 | 46 | 84 | 31 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | segdup | hetalt | 51.6497 | 35.3846 | 95.5882 | 96.8649 | 46 | 84 | 65 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 51.9508 | 35.3723 | 97.7778 | 57.1429 | 266 | 486 | 264 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | D6_15 | HG002compoundhet | * | 39.7758 | 35.3560 | 45.4585 | 32.6471 | 3193 | 5838 | 3138 | 3765 | 3754 | 99.7078 | |
| gduggal-bwaplat | SNP | tv | map_l250_m1_e0 | het | 52.1057 | 35.3106 | 99.3701 | 97.9946 | 631 | 1156 | 631 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 51.9933 | 35.3075 | 98.5816 | 45.5598 | 155 | 284 | 139 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 34.5477 | 35.3061 | 33.8212 | 42.2578 | 173 | 317 | 647 | 1266 | 1039 | 82.0695 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 30.0000 | 35.2941 | 26.0870 | 98.9890 | 6 | 11 | 6 | 17 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 49.5868 | 35.2941 | 83.3333 | 99.9019 | 6 | 11 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | homalt | 52.1739 | 35.2941 | 100.0000 | 94.3662 | 12 | 22 | 8 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 49.5868 | 35.2941 | 83.3333 | 98.9455 | 6 | 11 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 50.4854 | 35.2941 | 88.6364 | 93.5007 | 18 | 33 | 39 | 5 | 3 | 60.0000 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | homalt | 52.1579 | 35.2833 | 99.9692 | 82.1867 | 3251 | 5963 | 3251 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 43.4211 | 35.2336 | 56.5657 | 54.1348 | 1131 | 2079 | 1120 | 860 | 639 | 74.3023 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 37.9377 | 35.2193 | 41.1108 | 54.0150 | 3903 | 7179 | 3901 | 5588 | 5544 | 99.2126 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | het | 47.0393 | 35.2113 | 70.8333 | 94.8052 | 25 | 46 | 17 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | het | 47.0393 | 35.2113 | 70.8333 | 94.8608 | 25 | 46 | 17 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 51.9644 | 35.2064 | 99.1674 | 46.2264 | 3352 | 6169 | 3335 | 28 | 25 | 89.2857 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 45.6818 | 35.2014 | 65.0485 | 65.2418 | 201 | 370 | 201 | 108 | 80 | 74.0741 | |
| gduggal-snapplat | INDEL | D6_15 | HG002compoundhet | hetalt | 51.7417 | 35.1859 | 97.7226 | 44.3646 | 2868 | 5283 | 2875 | 67 | 52 | 77.6119 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 51.3821 | 35.1740 | 95.2929 | 41.6005 | 930 | 1714 | 911 | 45 | 35 | 77.7778 | |
| gduggal-bwaplat | SNP | * | map_l250_m1_e0 | * | 51.9747 | 35.1703 | 99.5300 | 97.3642 | 2540 | 4682 | 2541 | 12 | 3 | 25.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 30.6069 | 35.1515 | 27.1028 | 96.8469 | 58 | 107 | 58 | 156 | 7 | 4.4872 | |
| gduggal-snapplat | INDEL | D6_15 | * | hetalt | 51.3567 | 35.1358 | 95.3989 | 60.4943 | 2872 | 5302 | 2882 | 139 | 111 | 79.8561 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | homalt | 52.0000 | 35.1351 | 100.0000 | 94.7712 | 13 | 24 | 8 | 0 | 0 | ||