PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50551-50600 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 41.5500 | 37.4241 | 46.6984 | 73.3990 | 2220 | 3712 | 2256 | 2575 | 311 | 12.0777 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 40.2625 | 37.4075 | 43.5894 | 47.0109 | 3538 | 5920 | 3512 | 4545 | 4494 | 98.8779 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 49.9128 | 37.3964 | 75.0227 | 61.0403 | 902 | 1510 | 826 | 275 | 49 | 17.8182 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 50.1059 | 37.3855 | 75.9467 | 75.6447 | 1224 | 2050 | 1083 | 343 | 104 | 30.3207 | |
| mlin-fermikit | SNP | * | map_l150_m1_e0 | het | 54.1179 | 37.3680 | 98.0827 | 65.3701 | 7218 | 12098 | 7213 | 141 | 5 | 3.5461 | |
| gduggal-bwaplat | SNP | tv | map_l125_m0_e0 | homalt | 54.3607 | 37.3255 | 100.0000 | 86.5727 | 829 | 1392 | 829 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 47.4248 | 37.3206 | 65.0316 | 30.6257 | 156 | 262 | 411 | 221 | 186 | 84.1629 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 40.5868 | 37.3203 | 44.4800 | 81.8709 | 571 | 959 | 556 | 694 | 384 | 55.3314 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 40.5868 | 37.3203 | 44.4800 | 81.8709 | 571 | 959 | 556 | 694 | 384 | 55.3314 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 54.0780 | 37.2951 | 98.3240 | 67.3953 | 182 | 306 | 176 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 39.2362 | 37.2842 | 41.4038 | 61.8887 | 2268 | 3815 | 2336 | 3306 | 2550 | 77.1325 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e1 | * | 54.2324 | 37.2605 | 99.5985 | 97.3745 | 2976 | 5011 | 2977 | 12 | 3 | 25.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 51.9110 | 37.2480 | 85.6132 | 63.2900 | 425 | 716 | 363 | 61 | 61 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 53.9291 | 37.2340 | 97.7654 | 86.7506 | 175 | 295 | 175 | 4 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 51.7959 | 37.2013 | 85.2349 | 63.2016 | 1401 | 2365 | 1397 | 242 | 216 | 89.2562 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 51.7959 | 37.2013 | 85.2349 | 63.2016 | 1401 | 2365 | 1397 | 242 | 216 | 89.2562 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 53.7340 | 37.1777 | 96.8750 | 57.0119 | 2192 | 3704 | 3317 | 107 | 99 | 92.5234 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 53.7340 | 37.1777 | 96.8750 | 57.0119 | 2192 | 3704 | 3317 | 107 | 99 | 92.5234 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 51.8358 | 37.1747 | 85.5917 | 62.9991 | 1400 | 2366 | 1396 | 235 | 216 | 91.9149 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 51.8358 | 37.1747 | 85.5917 | 62.9991 | 1400 | 2366 | 1396 | 235 | 216 | 91.9149 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 49.3103 | 37.1429 | 73.3333 | 75.4098 | 13 | 22 | 11 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e0 | * | 54.0835 | 37.1211 | 99.5918 | 97.3661 | 2927 | 4958 | 2928 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e0 | het | 54.0541 | 37.1134 | 99.4475 | 98.0089 | 720 | 1220 | 720 | 4 | 1 | 25.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 54.1353 | 37.1134 | 100.0000 | 32.0755 | 36 | 61 | 36 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 39.4885 | 37.0800 | 42.2316 | 61.7642 | 894 | 1517 | 897 | 1227 | 722 | 58.8427 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 40.2265 | 37.0781 | 43.9591 | 50.2516 | 4109 | 6973 | 4086 | 5209 | 5192 | 99.6736 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 43.5803 | 37.0727 | 52.8590 | 78.7470 | 423 | 718 | 416 | 371 | 276 | 74.3935 | |
| gduggal-bwaplat | SNP | ti | map_l250_m1_e0 | * | 54.0102 | 37.0605 | 99.5311 | 97.1343 | 1697 | 2882 | 1698 | 8 | 2 | 25.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 51.3775 | 37.0578 | 83.7332 | 64.5819 | 5479 | 9306 | 5235 | 1017 | 480 | 47.1976 | |
| gduggal-snapvard | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 37.0482 | 0.0000 | 0.0000 | 9328 | 15850 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | * | hetalt | 0.0000 | 37.0438 | 0.0000 | 0.0000 | 9348 | 15887 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 53.4023 | 37.0119 | 95.8478 | 69.3856 | 436 | 742 | 554 | 24 | 22 | 91.6667 | |
| anovak-vg | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 43.1111 | 37.0091 | 51.6227 | 61.5894 | 245 | 417 | 509 | 477 | 324 | 67.9245 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 40.0585 | 36.9961 | 43.6736 | 81.3091 | 3111 | 5298 | 3179 | 4100 | 363 | 8.8537 | |
| eyeh-varpipe | INDEL | I16_PLUS | * | * | 50.2841 | 36.9610 | 78.6262 | 37.5078 | 2357 | 4020 | 2358 | 641 | 639 | 99.6880 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 51.1783 | 36.9565 | 83.1933 | 65.7061 | 153 | 261 | 99 | 20 | 20 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | segdup | het | 48.4621 | 36.9565 | 70.3704 | 96.6376 | 34 | 58 | 19 | 8 | 1 | 12.5000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 51.4209 | 36.9403 | 84.5736 | 68.1324 | 2178 | 3718 | 2182 | 398 | 329 | 82.6633 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 51.4209 | 36.9403 | 84.5736 | 68.1324 | 2178 | 3718 | 2182 | 398 | 329 | 82.6633 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 42.8527 | 36.9227 | 51.0519 | 66.2725 | 1471 | 2513 | 1456 | 1396 | 1253 | 89.7564 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 36.9048 | 0.0000 | 0.0000 | 31 | 53 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | HG002complexvar | homalt | 50.1099 | 36.8932 | 78.0822 | 66.5138 | 114 | 195 | 114 | 32 | 13 | 40.6250 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 52.4345 | 36.8421 | 90.9091 | 71.0526 | 7 | 12 | 10 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 51.5337 | 36.8421 | 85.7143 | 98.8942 | 7 | 12 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 51.5337 | 36.8421 | 85.7143 | 98.9114 | 7 | 12 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 36.8421 | 0.0000 | 0.0000 | 7 | 12 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 36.8421 | 0.0000 | 0.0000 | 7 | 12 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 36.8421 | 0.0000 | 0.0000 | 7 | 12 | 0 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l150_m1_e0 | het | 53.4835 | 36.7982 | 97.8528 | 67.3388 | 2556 | 4390 | 2552 | 56 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 47.4074 | 36.7816 | 66.6667 | 87.3684 | 32 | 55 | 32 | 16 | 15 | 93.7500 | |