PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50501-50550 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 33.6634 | 37.7778 | 30.3571 | 77.6000 | 17 | 28 | 17 | 39 | 34 | 87.1795 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 43.9560 | 37.7358 | 52.6316 | 97.2333 | 40 | 66 | 40 | 36 | 27 | 75.0000 | |
| anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | het | 47.2130 | 37.7301 | 63.0631 | 92.0173 | 123 | 203 | 140 | 82 | 10 | 12.1951 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 54.7241 | 37.7119 | 99.6997 | 43.1741 | 356 | 588 | 332 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 51.7864 | 37.7083 | 82.6389 | 69.0323 | 181 | 299 | 119 | 25 | 25 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 50.5495 | 37.7049 | 76.6667 | 71.4286 | 23 | 38 | 23 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 40.4915 | 37.7049 | 43.7229 | 36.0111 | 23 | 38 | 101 | 130 | 128 | 98.4615 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 52.2378 | 37.7049 | 85.0000 | 51.2195 | 23 | 38 | 17 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 48.6558 | 37.7049 | 68.5714 | 84.9138 | 23 | 38 | 24 | 11 | 10 | 90.9091 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 53.4400 | 37.6975 | 91.7582 | 47.5504 | 167 | 276 | 167 | 15 | 13 | 86.6667 | |
| mlin-fermikit | SNP | ti | map_l150_m1_e0 | het | 54.4721 | 37.6880 | 98.2090 | 64.1838 | 4662 | 7708 | 4661 | 85 | 5 | 5.8824 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 44.8798 | 37.6755 | 55.4905 | 73.6943 | 4185 | 6923 | 5685 | 4560 | 444 | 9.7368 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 38.8587 | 37.6192 | 40.1826 | 50.2147 | 907 | 1504 | 1584 | 2358 | 1680 | 71.2468 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 54.3418 | 37.6000 | 97.9592 | 37.9747 | 47 | 78 | 48 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | map_l100_m1_e0 | homalt | 54.6448 | 37.5981 | 99.9706 | 80.1633 | 3400 | 5643 | 3400 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 52.1726 | 37.5740 | 85.3233 | 64.3826 | 4315 | 7169 | 4302 | 740 | 648 | 87.5676 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 41.1509 | 37.5633 | 45.4962 | 49.7904 | 2374 | 3946 | 3379 | 4048 | 3339 | 82.4852 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 41.1509 | 37.5633 | 45.4962 | 49.7904 | 2374 | 3946 | 3379 | 4048 | 3339 | 82.4852 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 52.0817 | 37.5305 | 85.0613 | 64.9709 | 4310 | 7174 | 4299 | 755 | 639 | 84.6358 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 40.8104 | 37.5245 | 44.7270 | 52.3629 | 5548 | 9237 | 5505 | 6803 | 6744 | 99.1327 | |
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | hetalt | 54.5455 | 37.5000 | 100.0000 | 94.8276 | 6 | 10 | 6 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 54.5455 | 37.5000 | 100.0000 | 99.2228 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l100_m0_e0 | hetalt | 54.5455 | 37.5000 | 100.0000 | 94.8276 | 6 | 10 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 50.6602 | 37.5000 | 78.0516 | 49.9118 | 1434 | 2390 | 665 | 187 | 113 | 60.4278 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | het | 54.5455 | 37.5000 | 100.0000 | 64.2857 | 3 | 5 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | segdup | het | 54.5455 | 37.5000 | 100.0000 | 97.3607 | 9 | 15 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e0 | * | 54.5455 | 37.5000 | 100.0000 | 99.1690 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e1 | * | 54.5455 | 37.5000 | 100.0000 | 99.2063 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m0_e0 | het | 54.5455 | 37.5000 | 100.0000 | 66.6667 | 3 | 5 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m0_e0 | * | 46.1538 | 37.5000 | 60.0000 | 96.4029 | 3 | 5 | 3 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 53.3333 | 37.5000 | 92.3077 | 99.6143 | 6 | 10 | 60 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 42.8571 | 37.5000 | 50.0000 | 25.0000 | 3 | 5 | 3 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l150_m0_e0 | * | 54.5455 | 37.5000 | 100.0000 | 97.7612 | 3 | 5 | 3 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l125_m0_e0 | hetalt | 54.5455 | 37.5000 | 100.0000 | 85.7143 | 3 | 5 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | * | 50.0000 | 37.5000 | 75.0000 | 95.5556 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e1 | * | 50.0000 | 37.5000 | 75.0000 | 95.8333 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | func_cds | het | 52.9412 | 37.5000 | 90.0000 | 41.1765 | 9 | 15 | 9 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | func_cds | het | 50.0000 | 37.5000 | 75.0000 | 50.0000 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | homalt | 54.5455 | 37.5000 | 100.0000 | 88.4615 | 3 | 5 | 6 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | tech_badpromoters | het | 35.2941 | 37.5000 | 33.3333 | 89.1566 | 3 | 5 | 3 | 6 | 0 | 0.0000 | |
| anovak-vg | SNP | * | map_l100_m0_e0 | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 6 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | func_cds | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 3 | 5 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 3 | 5 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l100_m0_e0 | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 6 | 10 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 15 | 25 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 3 | 5 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 32.5234 | 37.5000 | 28.7129 | 27.3381 | 9 | 15 | 29 | 72 | 60 | 83.3333 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 27.6316 | 37.5000 | 21.8750 | 57.3333 | 6 | 10 | 7 | 25 | 17 | 68.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 42.1139 | 37.4782 | 48.0583 | 42.5126 | 7719 | 12877 | 7710 | 8333 | 8271 | 99.2560 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | het | 54.4177 | 37.4555 | 99.4595 | 98.0055 | 736 | 1229 | 736 | 4 | 1 | 25.0000 | |