PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50401-50450 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | ti | map_l100_m2_e1 | hetalt | 55.8140 | 38.7097 | 100.0000 | 88.7850 | 12 | 19 | 12 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 54.0397 | 38.7097 | 89.4737 | 72.4638 | 108 | 171 | 34 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | HG002compoundhet | homalt | 46.3972 | 38.7097 | 57.8947 | 75.6410 | 12 | 19 | 11 | 8 | 8 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | HG002compoundhet | homalt | 15.7021 | 38.7097 | 9.8485 | 69.8630 | 12 | 19 | 13 | 119 | 118 | 99.1597 | |
| egarrison-hhga | INDEL | D16_PLUS | map_siren | hetalt | 54.6410 | 38.7097 | 92.8571 | 81.8182 | 12 | 19 | 13 | 1 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l100_m2_e1 | hetalt | 55.8140 | 38.7097 | 100.0000 | 93.1034 | 12 | 19 | 12 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | HG002compoundhet | homalt | 3.2572 | 38.7097 | 1.7002 | 37.4879 | 12 | 19 | 11 | 636 | 636 | 100.0000 | |
| ckim-vqsr | SNP | tv | map_l100_m2_e1 | homalt | 55.8010 | 38.7014 | 99.9722 | 81.3226 | 3600 | 5702 | 3600 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 46.7905 | 38.6828 | 59.1981 | 64.3248 | 511 | 810 | 502 | 346 | 329 | 95.0867 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | homalt | 53.1250 | 38.6364 | 85.0000 | 92.5094 | 17 | 27 | 17 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | * | 55.6962 | 38.5965 | 100.0000 | 99.0340 | 44 | 70 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l100_m1_e0 | * | 55.3459 | 38.5965 | 97.7778 | 90.5462 | 44 | 70 | 44 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 53.5912 | 38.5935 | 87.6543 | 68.1102 | 225 | 358 | 71 | 10 | 10 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 54.3046 | 38.5882 | 91.6201 | 62.7471 | 328 | 522 | 328 | 30 | 21 | 70.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 54.4398 | 38.5882 | 92.3944 | 62.6316 | 328 | 522 | 328 | 27 | 21 | 77.7778 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 53.3784 | 38.5366 | 86.8132 | 64.4531 | 79 | 126 | 79 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 53.3784 | 38.5366 | 86.8132 | 64.4531 | 79 | 126 | 79 | 12 | 11 | 91.6667 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 53.1073 | 38.5246 | 85.4545 | 67.2619 | 47 | 75 | 47 | 8 | 7 | 87.5000 | |
| ckim-vqsr | SNP | tv | map_l100_m2_e0 | homalt | 55.5756 | 38.4849 | 99.9718 | 81.4225 | 3546 | 5668 | 3546 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | HG002complexvar | het | 53.6535 | 38.4824 | 88.5714 | 55.2511 | 426 | 681 | 434 | 56 | 34 | 60.7143 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 54.6624 | 38.4615 | 94.4444 | 73.7226 | 15 | 24 | 34 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 55.5556 | 38.4615 | 100.0000 | 83.9286 | 10 | 16 | 9 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 55.5556 | 38.4615 | 100.0000 | 83.3333 | 10 | 16 | 10 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | het | 48.1704 | 38.4615 | 64.4359 | 89.9093 | 305 | 488 | 337 | 186 | 31 | 16.6667 | |
| anovak-vg | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 38.4615 | 0.0000 | 0.0000 | 5 | 8 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | homalt | 52.6316 | 38.4615 | 83.3333 | 98.9111 | 5 | 8 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m0_e0 | homalt | 55.5556 | 38.4615 | 100.0000 | 98.9691 | 5 | 8 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 55.5556 | 38.4615 | 100.0000 | 91.4530 | 10 | 16 | 10 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 52.6316 | 38.4615 | 83.3333 | 99.1018 | 5 | 8 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m1_e0 | homalt | 55.5556 | 38.4615 | 100.0000 | 93.8053 | 10 | 16 | 7 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 52.3244 | 38.4502 | 81.8636 | 44.8624 | 1047 | 1676 | 492 | 109 | 68 | 62.3853 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e1 | het | 55.1935 | 38.4322 | 97.8827 | 71.7300 | 2824 | 4524 | 2820 | 61 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m1_e0 | het | 55.4141 | 38.4227 | 99.3482 | 97.7302 | 1827 | 2928 | 1829 | 12 | 3 | 25.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 38.3929 | 0.0000 | 0.0000 | 43 | 69 | 0 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | * | 54.1375 | 38.3721 | 91.8919 | 72.3881 | 33 | 53 | 34 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | * | 52.1158 | 38.3607 | 81.2500 | 92.0966 | 117 | 188 | 117 | 27 | 20 | 74.0741 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m1_e0 | * | 54.9020 | 38.3562 | 96.5517 | 93.4389 | 28 | 45 | 28 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002complexvar | het | 50.6283 | 38.3459 | 74.4868 | 43.8221 | 255 | 410 | 254 | 87 | 87 | 100.0000 | |
| ckim-vqsr | SNP | tv | map_l250_m0_e0 | * | 54.7664 | 38.3007 | 96.0656 | 98.5419 | 293 | 472 | 293 | 12 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | segdup | homalt | 42.7935 | 38.2979 | 48.4848 | 89.2157 | 18 | 29 | 16 | 17 | 16 | 94.1176 | |
| anovak-vg | INDEL | I16_PLUS | segdup | * | 48.3031 | 38.2979 | 65.3846 | 88.6463 | 18 | 29 | 17 | 9 | 5 | 55.5556 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 49.9696 | 38.2775 | 71.9457 | 61.2960 | 160 | 258 | 159 | 62 | 56 | 90.3226 | |
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | * | 51.6639 | 38.2748 | 79.4606 | 60.5371 | 2538 | 4093 | 2534 | 655 | 574 | 87.6336 | |
| ckim-vqsr | SNP | * | map_l250_m0_e0 | * | 54.9244 | 38.2670 | 97.2619 | 98.4570 | 817 | 1318 | 817 | 23 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | homalt | 55.3459 | 38.2609 | 100.0000 | 98.0304 | 44 | 71 | 44 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l250_m0_e0 | * | 55.0131 | 38.2482 | 97.9439 | 98.4056 | 524 | 846 | 524 | 11 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 38.2353 | 0.0000 | 0.0000 | 26 | 42 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 38.2353 | 0.0000 | 0.0000 | 26 | 42 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 47.5294 | 38.2286 | 62.8109 | 62.6047 | 505 | 816 | 505 | 299 | 296 | 98.9967 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e0 | het | 54.9832 | 38.2239 | 97.9130 | 71.6136 | 2772 | 4480 | 2768 | 59 | 0 | 0.0000 | |