PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1003 1004 1005 1006 1007 1008 1009 1010 1011 ... 1720 1721 » 50301-50350 / 86044 show all
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	42.9887	39.8223	46.7021	60.4305	7037	10634	7031	8024	7936	98.9033
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	42.9887	39.8223	46.7021	60.4305	7037	10634	7031	8024	7936	98.9033
jpowers-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	47.6809	39.8148	59.4203	84.0278	43	65	41	28	28	100.0000
anovak-vg	INDEL	I1_5	map_l125_m2_e1	het	49.1777	39.7638	64.4315	91.9559	202	306	221	122	15	12.2951
mlin-fermikit	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	56.8303	39.7366	99.7333	37.6559	724	1098	748	2	2	100.0000
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	45.9396	39.7316	54.4469	43.4180	5477	8308	5626	4707	3701	78.6276
mlin-fermikit	SNP	tv	map_l100_m0_e0	het	56.5874	39.7258	98.3185	59.7124	2869	4353	2865	49	0	0.0000
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	49.9912	39.7086	67.4603	80.7634	218	331	255	123	24	19.5122
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	56.8282	39.6923	100.0000	35.3808	258	392	263	0	0
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	37.9373	39.6694	36.3501	63.2242	384	584	976	1709	1112	65.0673
ckim-isaac	INDEL	I6_15	map_l100_m2_e0	*	56.4417	39.6552	97.8723	91.1488	46	70	46	1	1	100.0000
ckim-isaac	INDEL	I6_15	map_l100_m2_e1	*	56.4417	39.6552	97.8723	91.2639	46	70	46	1	1	100.0000
anovak-vg	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	50.7904	39.6185	70.7374	39.8375	540	823	5132	2123	1902	89.5902
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	42.7044	39.5869	46.3548	67.9809	1610	2457	1615	1869	1855	99.2509
anovak-vg	INDEL	I1_5	map_l125_m0_e0	het	48.1438	39.5833	61.4286	93.9707	76	116	86	54	7	12.9630
gduggal-snapvard	INDEL	I1_5	segdup	hetalt	0.0000	39.5833	0.0000	0.0000	19	29	0	0	0
gduggal-bwafb	INDEL	I16_PLUS	HG002complexvar	het	56.0161	39.5489	95.9799	46.2162	263	402	382	16	16	100.0000
ciseli-custom	INDEL	I6_15	func_cds	*	53.1250	39.5349	80.9524	32.2581	17	26	17	4	4	100.0000
gduggal-bwavard	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	49.7630	39.5223	67.1670	73.6334	728	1114	716	350	286	81.7143
gduggal-bwaplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	54.7486	39.5161	89.0909	97.3583	49	75	49	6	1	16.6667
gduggal-bwafb	INDEL	I16_PLUS	*	het	55.7818	39.5143	94.8163	37.5746	1074	1644	1884	103	103	100.0000
jpowers-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	51.4864	39.5122	73.8739	83.1563	81	124	82	29	28	96.5517
jpowers-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	51.4864	39.5122	73.8739	83.1563	81	124	82	29	28	96.5517
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	43.8569	39.4929	49.3052	41.4961	7211	11048	7203	7406	7360	99.3789
ciseli-custom	INDEL	I1_5	map_l250_m2_e1	*	46.1538	39.4737	55.5556	97.4782	45	69	45	36	27	75.0000
ciseli-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	*	40.2067	39.4727	40.9685	65.1113	1048	1607	1066	1536	1023	66.6016
mlin-fermikit	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	48.4670	39.4052	62.9412	75.7489	106	163	107	63	60	95.2381
gduggal-bwaplat	INDEL	D1_5	map_l250_m0_e0	het	56.5217	39.3939	100.0000	99.4522	13	20	13	0	0
gduggal-snapvard	INDEL	*	tech_badpromoters	homalt	56.5217	39.3939	100.0000	51.7241	13	20	14	0	0
gduggal-snapplat	INDEL	*	tech_badpromoters	homalt	53.0612	39.3939	81.2500	71.9298	13	20	13	3	0	0.0000
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	49.2494	39.3734	65.7385	28.0488	465	716	543	283	280	98.9399
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	39.9506	39.3669	40.5518	64.0084	485	747	485	711	356	50.0703
gduggal-snapfb	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	54.9992	39.3519	91.3043	52.3316	85	131	84	8	8	100.0000
jpowers-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	49.7306	39.3443	67.5676	84.2553	24	37	25	12	11	91.6667
gduggal-bwaplat	INDEL	*	map_l250_m1_e0	*	56.4706	39.3443	100.0000	98.8721	120	185	120	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	35.0904	39.3443	31.6667	53.3679	48	74	57	123	84	68.2927
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	49.2182	39.3273	65.7559	77.6192	304	469	361	188	52	27.6596
mlin-fermikit	SNP	ti	map_l150_m2_e1	het	56.1207	39.2931	98.1570	69.2394	5114	7901	5113	96	5	5.2083
anovak-vg	INDEL	D16_PLUS	map_l100_m0_e0	*	52.3810	39.2857	78.5714	92.5532	11	17	11	3	3	100.0000
gduggal-snapplat	INDEL	D6_15	map_l150_m2_e0	homalt	56.4103	39.2857	100.0000	94.2149	11	17	7	0	0
gduggal-bwafb	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	54.2254	39.2857	87.5000	57.8947	11	17	7	1	1	100.0000
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	56.2018	39.2727	98.7842	59.4828	324	501	325	4	4	100.0000
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	56.2018	39.2727	98.7842	59.4828	324	501	325	4	4	100.0000
ckim-isaac	INDEL	I16_PLUS	HG002complexvar	*	52.2963	39.2666	78.2675	62.9505	514	795	515	143	46	32.1678
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	45.1042	39.2655	52.9825	57.7778	139	215	151	134	99	73.8806
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	48.6764	39.2603	64.0343	80.0683	25657	39694	30253	16992	4936	29.0490
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	48.6764	39.2603	64.0343	80.0683	25657	39694	30253	16992	4936	29.0490
gduggal-snapplat	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	54.4770	39.2554	88.9798	82.4941	6052	9365	6088	754	644	85.4111
gduggal-bwaplat	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	56.3707	39.2473	100.0000	85.5446	73	113	73	0	0
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt	54.9313	39.2157	91.6667	45.4545	20	31	11	1	1	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge