PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50201-50250 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 32.4324 | 40.0000 | 27.2727 | 80.0000 | 2 | 3 | 3 | 8 | 6 | 75.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 91.6667 | 2 | 3 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 52.1739 | 40.0000 | 75.0000 | 63.6364 | 6 | 9 | 9 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 75.0000 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 78.2609 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 40.0000 | 80.0000 | 79.1667 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 50.3311 | 40.0000 | 67.8571 | 62.1622 | 14 | 21 | 38 | 18 | 17 | 94.4444 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 40.0000 | 40.0000 | 40.0000 | 99.5802 | 2 | 3 | 2 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 40.0000 | 66.6667 | 99.7432 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 55.5556 | 40.0000 | 90.9091 | 92.7869 | 20 | 30 | 20 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 90.4762 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 92.0000 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 57.1429 | 40.0000 | 100.0000 | 92.0000 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 57.1429 | 40.0000 | 100.0000 | 68.4211 | 14 | 21 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 57.1429 | 40.0000 | 100.0000 | 64.5161 | 6 | 9 | 11 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 87.5000 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 90.0000 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 57.1429 | 40.0000 | 100.0000 | 90.0000 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | decoy | * | 57.1429 | 40.0000 | 100.0000 | 99.9776 | 4 | 6 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 57.1429 | 40.0000 | 100.0000 | 99.8589 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 96.1538 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 97.5309 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 97.9381 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 57.1429 | 40.0000 | 100.0000 | 91.3043 | 6 | 9 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e0 | het | 57.1429 | 40.0000 | 100.0000 | 99.2701 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e1 | het | 57.1429 | 40.0000 | 100.0000 | 99.3007 | 2 | 3 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | * | 50.0000 | 40.0000 | 66.6667 | 97.8102 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | * | 50.0000 | 40.0000 | 66.6667 | 97.8723 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 53.9043 | 40.0000 | 82.6255 | 84.1880 | 216 | 324 | 214 | 45 | 36 | 80.0000 | |
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 57.1429 | 40.0000 | 100.0000 | 99.5000 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m0_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 96.3235 | 10 | 15 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | C1_5 | * | * | 0.0000 | 40.0000 | 0.0000 | 0.0000 | 4 | 6 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 30.7692 | 40.0000 | 25.0000 | 99.2747 | 2 | 3 | 2 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | C1_5 | * | * | 32.7774 | 40.0000 | 27.7641 | 94.8771 | 4 | 6 | 339 | 882 | 161 | 18.2540 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 55.4033 | 40.0000 | 90.0990 | 78.7815 | 92 | 138 | 91 | 10 | 9 | 90.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 55.0459 | 40.0000 | 88.2353 | 78.7500 | 14 | 21 | 15 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 57.1429 | 40.0000 | 100.0000 | 99.8373 | 2 | 3 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | C1_5 | * | * | 40.0000 | 100.0000 | 4 | 6 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 96.4286 | 2 | 3 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 92.6829 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 94.6429 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 50.0000 | 40.0000 | 66.6667 | 94.6429 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 80.9524 | 12 | 18 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l250_m1_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 91.3043 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m1_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 85.7143 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.0968 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.3016 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 93.7500 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l250_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 93.7500 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 54.9020 | 40.0000 | 87.5000 | 88.3212 | 14 | 21 | 14 | 2 | 2 | 100.0000 | |