PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
4951-5000 / 86044 show all
egarrison-hhgaINDELI6_15map_l150_m0_e0homalt
100.0000
100.0000
100.0000
90.6977
40400
egarrison-hhgaINDELI6_15map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
91.6667
30300
egarrison-hhgaINDELI6_15map_l150_m1_e0homalt
100.0000
100.0000
100.0000
92.6316
70700
egarrison-hhgaINDELI6_15map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
94.2308
30300
egarrison-hhgaINDELI6_15map_l150_m2_e0homalt
100.0000
100.0000
100.0000
93.8053
70700
egarrison-hhgaINDELI6_15map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
94.4444
30300
egarrison-hhgaINDELI6_15map_l150_m2_e1homalt
100.0000
100.0000
100.0000
93.3333
80800
egarrison-hhgaINDELI6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
98.9583
10100
egarrison-hhgaINDELI6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
96.0000
10100
egarrison-hhgaINDELI6_15map_l250_m1_e0homalt
100.0000
100.0000
100.0000
95.3125
30300
egarrison-hhgaINDELI6_15map_l250_m2_e0homalt
100.0000
100.0000
100.0000
95.5882
30300
egarrison-hhgaINDELI6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
95.7746
30300
egarrison-hhgaINDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
58.0645
1301300
egarrison-hhgaINDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
56.2500
70700
egarrison-hhgaINDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
30300
egarrison-hhgaINDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
66.6667
30300
egarrison-hhgaSNP*func_cdshetalt
100.0000
100.0000
100.0000
56.5217
1001000
egarrison-hhgaSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.2963
100.0000
92.8571
80.2817
1301311
100.0000
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
92.7536
1501500
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
88.8889
10100
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.1538
30300
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
92.7536
1501500
egarrison-hhgaSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.0000
10100
egarrison-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
73.6842
50500
egarrison-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
90.9091
100.0000
83.3333
64.7059
50511
100.0000
egarrison-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
egarrison-hhgaSNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
93.8776
30300
egarrison-hhgaSNP*segduphetalt
100.0000
100.0000
100.0000
97.8528
70700
egarrison-hhgaSNP*tech_badpromoters*
99.3671
100.0000
98.7421
47.8689
157015720
0.0000
egarrison-hhgaSNP*tech_badpromotershet
98.7179
100.0000
97.4684
44.7552
7707720
0.0000
egarrison-hhgaSNP*tech_badpromotershomalt
100.0000
100.0000
100.0000
50.6173
8008000
egarrison-hhgaSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
52.9412
80800
egarrison-hhgaSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
92.3077
100.0000
85.7143
81.5789
60611
100.0000
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
91.4894
1201200
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
10100
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.9184
20200
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
91.4894
1201200
egarrison-hhgaSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
90.9091
10100
egarrison-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
81.8182
20200
egarrison-hhgaSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
66.6667
100.0000
50.0000
71.4286
10111
100.0000
egarrison-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
28.5714
1001000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100