PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49151-49200 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.3939 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 90.3226 | 87.5000 | 93.3333 | 95.7386 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.1749 | 7 | 1 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 60.4317 | 87.5000 | 46.1538 | 56.3025 | 21 | 3 | 24 | 28 | 26 | 92.8571 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | * | 90.4232 | 87.5000 | 93.5484 | 93.6214 | 28 | 4 | 29 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | het | 87.5000 | 87.5000 | 87.5000 | 85.1852 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.3636 | 87.5000 | 67.7419 | 76.6917 | 21 | 3 | 21 | 10 | 9 | 90.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e0 | * | 93.3333 | 87.5000 | 100.0000 | 96.9432 | 7 | 1 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e1 | * | 93.3333 | 87.5000 | 100.0000 | 97.0588 | 7 | 1 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 81.0127 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 89.3617 | 87.5000 | 91.3043 | 98.8990 | 21 | 3 | 21 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.3333 | 7 | 1 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.8551 | 7 | 1 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.1408 | 7 | 1 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.2366 | 7 | 1 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 93.2692 | 35 | 5 | 35 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | func_cds | het | 93.3333 | 87.5000 | 100.0000 | 84.4444 | 7 | 1 | 7 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | func_cds | het | 87.5000 | 87.5000 | 87.5000 | 72.4138 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | tech_badpromoters | het | 70.0000 | 87.5000 | 58.3333 | 47.8261 | 7 | 1 | 7 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | func_cds | het | 84.0000 | 87.5000 | 80.7692 | 33.3333 | 21 | 3 | 21 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 91.2052 | 87.5000 | 95.2381 | 86.0000 | 42 | 6 | 40 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 93.3333 | 87.5000 | 100.0000 | 68.4211 | 14 | 2 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l100_m0_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 64.1026 | 14 | 2 | 14 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 93.2584 | 7 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 88.4758 | 87.5000 | 89.4737 | 95.6916 | 14 | 2 | 17 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 94.6429 | 7 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | HG002compoundhet | homalt | 82.3529 | 87.5000 | 77.7778 | 62.5000 | 7 | 1 | 7 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | HG002compoundhet | homalt | 73.6842 | 87.5000 | 63.6364 | 59.2593 | 7 | 1 | 7 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.5000 | 87.5000 | 87.5000 | 78.3784 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | segdup | het | 93.3333 | 87.5000 | 100.0000 | 87.9781 | 21 | 3 | 22 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.0588 | 7 | 1 | 7 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | het | 87.5000 | 87.5000 | 87.5000 | 86.2069 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 68.8525 | 87.5000 | 56.7568 | 72.9927 | 21 | 3 | 21 | 16 | 15 | 93.7500 | |
| raldana-dualsentieon | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 53.3333 | 7 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 87.2727 | 7 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.7097 | 7 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m0_e0 | het | 93.3333 | 87.5000 | 100.0000 | 92.3077 | 7 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m0_e0 | * | 89.3617 | 87.5000 | 91.3043 | 97.4099 | 21 | 3 | 21 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 78.7879 | 7 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 83.7209 | 7 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 84.4444 | 7 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 94.4882 | 7 | 1 | 7 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.7503 | 87.5000 | 90.0369 | 78.1275 | 252 | 36 | 244 | 27 | 25 | 92.5926 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 97.8788 | 14 | 2 | 14 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 87.5000 | 73.6842 | 97.7778 | 14 | 2 | 14 | 5 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | func_cds | het | 93.3333 | 87.5000 | 100.0000 | 77.4194 | 7 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 98.5597 | 7 | 1 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 99.7253 | 7 | 1 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.7455 | 87.5000 | 78.4810 | 39.4636 | 21 | 3 | 124 | 34 | 14 | 41.1765 | |