PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48651-48700 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.5234 | 86.7470 | 99.1239 | 87.6564 | 792 | 121 | 792 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I6_15 | segdup | het | 88.9311 | 86.7470 | 91.2281 | 85.7500 | 72 | 11 | 104 | 10 | 10 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m1_e0 | het | 91.2990 | 86.7484 | 96.3534 | 83.6231 | 13374 | 2043 | 13370 | 506 | 14 | 2.7668 | |
| asubramanian-gatk | INDEL | * | map_l125_m2_e0 | * | 91.1937 | 86.7486 | 96.1190 | 97.1265 | 1905 | 291 | 1907 | 77 | 8 | 10.3896 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | het | 89.9101 | 86.7532 | 93.3054 | 91.0049 | 668 | 102 | 669 | 48 | 4 | 8.3333 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.9881 | 86.7537 | 97.8947 | 61.8780 | 465 | 71 | 465 | 10 | 9 | 90.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7196 | 86.7545 | 99.5656 | 30.9538 | 1120 | 171 | 1146 | 5 | 4 | 80.0000 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.2085 | 86.7552 | 98.3934 | 61.1512 | 2679 | 409 | 2756 | 45 | 8 | 17.7778 | |
| ckim-isaac | INDEL | D1_5 | HG002compoundhet | hetalt | 92.5735 | 86.7561 | 99.2273 | 35.2319 | 8863 | 1353 | 9117 | 71 | 65 | 91.5493 | |
| jpowers-varprowl | INDEL | I1_5 | * | * | 89.2914 | 86.7586 | 91.9765 | 55.5394 | 130714 | 19950 | 130591 | 11392 | 11025 | 96.7784 | |
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 82.0846 | 86.7638 | 77.8844 | 75.9358 | 41880 | 6389 | 42785 | 12149 | 5113 | 42.0858 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 92.9134 | 86.7647 | 100.0000 | 72.5581 | 59 | 9 | 59 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 92.9134 | 86.7647 | 100.0000 | 73.6607 | 59 | 9 | 59 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.9134 | 86.7647 | 100.0000 | 97.2936 | 59 | 9 | 59 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 86.7681 | 0.0000 | 0.0000 | 1482 | 226 | 0 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | map_l150_m2_e0 | homalt | 92.8770 | 86.7681 | 99.9113 | 74.6788 | 10151 | 1548 | 10142 | 9 | 9 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 91.3561 | 86.7685 | 96.4558 | 48.1730 | 9089 | 1386 | 2531 | 93 | 92 | 98.9247 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 82.5807 | 86.7710 | 78.7765 | 37.6168 | 610 | 93 | 631 | 170 | 95 | 55.8824 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 86.7728 | 0.0000 | 0.0000 | 1581 | 241 | 0 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | HG002complexvar | hetalt | 91.0113 | 86.7742 | 95.6835 | 42.9158 | 269 | 41 | 266 | 12 | 12 | 100.0000 | |
| gduggal-snapplat | SNP | tv | HG002complexvar | hetalt | 91.0113 | 86.7742 | 95.6835 | 42.9158 | 269 | 41 | 266 | 12 | 12 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 89.7485 | 86.7769 | 92.9308 | 90.5838 | 630 | 96 | 631 | 48 | 4 | 8.3333 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 84.6774 | 86.7769 | 82.6772 | 96.9287 | 105 | 16 | 105 | 22 | 2 | 9.0909 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.4957 | 86.7773 | 99.0210 | 60.7081 | 12817 | 1953 | 12846 | 127 | 18 | 14.1732 | |
| astatham-gatk | SNP | * | map_l250_m0_e0 | het | 92.0747 | 86.7862 | 98.0495 | 94.4847 | 1307 | 199 | 1307 | 26 | 3 | 11.5385 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.7973 | 86.7868 | 95.1964 | 28.2652 | 1156 | 176 | 5767 | 291 | 281 | 96.5636 | |
| gduggal-snapfb | INDEL | * | map_l250_m0_e0 | het | 87.6190 | 86.7925 | 88.4615 | 96.4817 | 46 | 7 | 46 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.9293 | 86.7925 | 100.0000 | 60.7477 | 46 | 7 | 42 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 79.6660 | 86.7925 | 73.6211 | 64.8101 | 644 | 98 | 614 | 220 | 220 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 85.1171 | 86.7925 | 83.5052 | 83.2470 | 92 | 14 | 81 | 16 | 9 | 56.2500 | |
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 89.4619 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 92.0000 | 86.7925 | 97.8723 | 90.7480 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 91.0476 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 91.3284 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e0 | * | 92.0000 | 86.7925 | 97.8723 | 92.3203 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 92.5040 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 89.9573 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e0 | * | 92.0000 | 86.7925 | 97.8723 | 91.1488 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 91.3761 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002complexvar | * | 92.5060 | 86.7938 | 99.0230 | 59.4097 | 28957 | 4406 | 28886 | 285 | 203 | 71.2281 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 68.4389 | 86.7948 | 56.4917 | 55.1969 | 1400 | 213 | 1388 | 1069 | 1020 | 95.4163 | |
| anovak-vg | INDEL | D1_5 | map_l100_m0_e0 | het | 82.2817 | 86.8020 | 78.2090 | 87.2186 | 513 | 78 | 524 | 146 | 51 | 34.9315 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 89.1338 | 86.8027 | 91.5935 | 49.4610 | 638 | 97 | 730 | 67 | 66 | 98.5075 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.2661 | 86.8078 | 96.2071 | 67.4824 | 1599 | 243 | 1598 | 63 | 54 | 85.7143 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 75.2916 | 86.8093 | 66.4721 | 57.3739 | 6410 | 974 | 6834 | 3447 | 1755 | 50.9138 | |
| anovak-vg | SNP | ti | map_l125_m1_e0 | * | 81.2273 | 86.8110 | 76.3184 | 74.3923 | 25466 | 3869 | 25253 | 7836 | 1746 | 22.2818 | |
| qzeng-custom | SNP | ti | map_siren | * | 92.5421 | 86.8188 | 99.0732 | 61.8902 | 87127 | 13228 | 86370 | 808 | 570 | 70.5446 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 92.0208 | 86.8227 | 97.8809 | 74.0738 | 3413 | 518 | 3418 | 74 | 11 | 14.8649 | |
| gduggal-bwafb | INDEL | I1_5 | HG002compoundhet | het | 91.6005 | 86.8235 | 96.9338 | 46.2155 | 738 | 112 | 6702 | 212 | 180 | 84.9057 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9487 | 86.8263 | 100.0000 | 68.5775 | 145 | 22 | 148 | 0 | 0 | ||