PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47451-47500 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 78.5047 | 22 | 4 | 23 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 79.3103 | 22 | 4 | 24 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 78.7037 | 22 | 4 | 23 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 79.1304 | 22 | 4 | 24 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.7677 | 22 | 4 | 23 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.5701 | 22 | 4 | 24 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 92.0863 | 22 | 4 | 22 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.7677 | 22 | 4 | 23 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.5701 | 22 | 4 | 24 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 90.7563 | 22 | 4 | 22 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9225 | 84.6154 | 98.2456 | 43.0000 | 11 | 2 | 56 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 97.2973 | 11 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m0_e0 | homalt | 91.6667 | 84.6154 | 100.0000 | 96.0145 | 11 | 2 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 91.6667 | 84.6154 | 100.0000 | 71.1111 | 11 | 2 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 70.2703 | 11 | 2 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.6667 | 84.6154 | 100.0000 | 59.7561 | 33 | 6 | 33 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 71.7949 | 11 | 2 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 97.1939 | 22 | 4 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 97.1671 | 11 | 2 | 10 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.6699 | 22 | 4 | 23 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 78.1818 | 22 | 4 | 24 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l250_m0_e0 | homalt | 91.6667 | 84.6154 | 100.0000 | 97.0976 | 11 | 2 | 11 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.2277 | 22 | 4 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.5701 | 22 | 4 | 24 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 78.5047 | 22 | 4 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 79.3103 | 22 | 4 | 24 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 91.0931 | 22 | 4 | 22 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.6667 | 84.6154 | 100.0000 | 42.4110 | 759 | 138 | 793 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.6667 | 84.6154 | 100.0000 | 58.7500 | 33 | 6 | 33 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 68.5714 | 11 | 2 | 11 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 75.7895 | 22 | 4 | 23 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.4706 | 22 | 4 | 24 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 89.7959 | 84.6154 | 95.6522 | 94.0415 | 22 | 4 | 22 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 86.2745 | 84.6154 | 88.0000 | 94.3311 | 22 | 4 | 22 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | * | 86.2745 | 84.6154 | 88.0000 | 94.3694 | 22 | 4 | 22 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 90.9091 | 22 | 4 | 22 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 68.5714 | 11 | 2 | 11 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 90.6383 | 22 | 4 | 22 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 70.2703 | 11 | 2 | 11 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.0850 | 84.6196 | 98.6202 | 51.6582 | 15372 | 2794 | 15367 | 215 | 153 | 71.1628 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.0850 | 84.6196 | 98.6202 | 51.6582 | 15372 | 2794 | 15367 | 215 | 153 | 71.1628 | |
| anovak-vg | SNP | tv | map_l100_m2_e0 | homalt | 91.3367 | 84.6212 | 99.2099 | 63.3369 | 7797 | 1417 | 7785 | 62 | 46 | 74.1935 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 85.2884 | 84.6243 | 85.9630 | 70.3947 | 27073 | 4919 | 27454 | 4483 | 4096 | 91.3674 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 82.0120 | 84.6300 | 79.5511 | 62.0624 | 446 | 81 | 319 | 82 | 60 | 73.1707 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 91.0457 | 84.6445 | 98.4943 | 38.8914 | 2679 | 486 | 2682 | 41 | 28 | 68.2927 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 86.1643 | 84.6457 | 87.7384 | 69.2630 | 645 | 117 | 644 | 90 | 80 | 88.8889 | |
| gduggal-bwafb | INDEL | D6_15 | * | hetalt | 90.9853 | 84.6464 | 98.3504 | 52.1249 | 6919 | 1255 | 1252 | 21 | 21 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 87.2924 | 84.6591 | 90.0947 | 59.0476 | 1043 | 189 | 1046 | 115 | 86 | 74.7826 | |
| gduggal-bwafb | INDEL | D6_15 | HG002compoundhet | hetalt | 91.1254 | 84.6645 | 98.6540 | 40.8708 | 6901 | 1250 | 1246 | 17 | 17 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 90.9015 | 84.6774 | 98.1132 | 99.9441 | 105 | 19 | 104 | 2 | 2 | 100.0000 | |