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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 923 924 925 926 927 928 929 930 931 ... 1720 1721 » 46301-46350 / 86044 show all
gduggal-bwaplat	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	89.7995	82.2060	98.9387	71.6625	45732	9899	45775	491	144	29.3279
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	80.2108	82.2072	78.3091	58.4509	1095	237	1130	313	202	64.5367
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	87.4099	82.2078	93.3149	53.2942	3031	656	3043	218	199	91.2844
ckim-gatk	SNP	*	map_l100_m2_e1	*	89.5170	82.2096	98.2503	79.5686	61441	13296	61430	1094	86	7.8611
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	88.5630	82.2103	95.9796	32.1478	5661	1225	1886	79	51	64.5570
gduggal-bwavard	SNP	*	HG002compoundhet	*	84.7137	82.2128	87.3715	45.7405	21229	4593	20991	3034	2565	84.5419
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	86.2959	82.2171	90.8006	44.5699	3204	693	7531	763	673	88.2045
qzeng-custom	INDEL	D16_PLUS	map_l100_m2_e0	*	36.0728	82.2222	23.1047	89.1924	74	16	64	213	1	0.4695
gduggal-bwafb	INDEL	I1_5	map_l100_m2_e1	hetalt	90.2439	82.2222	100.0000	93.0723	37	8	23	0	0
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	90.0617	82.2222	99.5536	68.6275	222	48	223	1	1	100.0000
gduggal-bwaplat	INDEL	I6_15	segdup	hetalt	89.1566	82.2222	97.3684	92.6070	37	8	37	1	1	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	82.2326	82.2222	82.2430	78.7698	111	24	88	19	18	94.7368
gduggal-snapfb	INDEL	I6_15	segdup	hetalt	82.7740	82.2222	83.3333	86.0465	37	8	10	2	2	100.0000
anovak-vg	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	75.1094	82.2222	69.1293	80.3287	592	128	786	351	146	41.5954
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	84.1619	82.2267	86.1905	45.3886	7777	1681	7783	1247	1228	98.4763
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	87.6652	82.2314	93.8679	58.9147	199	43	199	13	3	23.0769
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	89.7947	82.2323	98.8889	27.1255	361	78	356	4	4	100.0000
ciseli-custom	INDEL	D1_5	map_l125_m1_e0	homalt	81.4736	82.2350	80.7263	86.0483	287	62	289	69	57	82.6087
gduggal-snapvard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	29.5626	82.2368	18.0203	88.7412	125	27	142	646	14	2.1672
jmaeng-gatk	SNP	*	map_l100_m2_e1	*	89.5016	82.2404	98.1693	79.7702	61464	13273	61453	1146	79	6.8935
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	83.2354	82.2465	84.2483	57.4547	1728	373	1642	307	301	98.0456
anovak-vg	SNP	tv	map_l150_m0_e0	*	77.9452	82.2472	74.0709	86.1595	3433	741	3428	1200	357	29.7500
gduggal-snapvard	INDEL	*	func_cds	*	83.0794	82.2472	83.9286	43.6242	366	79	423	81	65	80.2469
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	90.0576	82.2478	99.5062	84.1820	3220	695	3224	16	14	87.5000
anovak-vg	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	74.9889	82.2562	68.9015	82.7699	1451	313	1819	821	334	40.6821
anovak-vg	SNP	ti	map_l125_m2_e1	homalt	90.0123	82.2569	99.3822	67.2869	9425	2033	9330	58	53	91.3793
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	*	90.2655	82.2581	100.0000	99.9182	102	22	101	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	82.9268	82.2581	83.6066	84.9383	51	11	51	10	2	20.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	*	89.8678	82.2581	99.0291	99.9257	102	22	102	1	0	0.0000
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	*	83.5594	82.2599	84.9006	82.0181	2184	471	2221	395	339	85.8228
gduggal-snapplat	SNP	tv	map_l125_m0_e0	homalt	90.2668	82.2602	100.0000	75.6753	1827	394	1828	0	0
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	90.2681	82.2624	100.0000	94.4664	7643	1648	14	0	0
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	90.2681	82.2624	100.0000	94.4664	7643	1648	14	0	0
anovak-vg	SNP	ti	map_l250_m2_e0	*	75.7617	82.2684	70.2088	91.5692	4120	888	4103	1741	394	22.6307
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	86.9385	82.2761	92.1610	61.6572	441	95	435	37	30	81.0811
raldana-dualsentieon	INDEL	*	HG002compoundhet	het	83.9323	82.2912	85.6402	78.9688	3369	725	3137	526	520	98.8593
ciseli-custom	INDEL	D6_15	map_siren	homalt	66.5025	82.3077	55.7895	83.1709	107	23	106	84	76	90.4762
ckim-isaac	INDEL	*	segdup	hetalt	89.9263	82.3077	99.0991	92.8479	107	23	110	1	1	100.0000
anovak-vg	SNP	ti	map_l250_m2_e1	*	75.8245	82.3089	70.2872	91.6096	4178	898	4161	1759	398	22.6265
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	87.6651	82.3219	93.7500	55.0802	312	67	315	21	21	100.0000
qzeng-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	73.2113	82.3308	65.9106	63.8478	1752	376	1947	1007	294	29.1956
gduggal-bwaplat	SNP	*	map_siren	*	90.0933	82.3317	99.4705	71.0074	120392	25836	120427	641	167	26.0530
gduggal-bwaplat	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	90.1566	82.3347	99.6207	65.0618	797	171	788	3	3	100.0000
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	69.3724	82.3394	59.9338	79.2083	359	77	362	242	234	96.6942
ghariani-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	86.2429	82.3474	90.5252	56.5548	877	188	879	92	63	68.4783
ghariani-varprowl	INDEL	D6_15	tech_badpromoters	*	87.5000	82.3529	93.3333	55.8824	14	3	14	1	1	100.0000
ghariani-varprowl	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	het	73.6842	82.3529	66.6667	96.9741	14	3	14	7	1	14.2857
hfeng-pmm1	INDEL	D6_15	tech_badpromoters	*	90.3226	82.3529	100.0000	54.8387	14	3	14	0	0
gduggal-snapvard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	35.8318	82.3529	22.8972	89.5355	182	39	196	660	17	2.5758
gduggal-bwavard	INDEL	D6_15	tech_badpromoters	*	84.8485	82.3529	87.5000	57.8947	14	3	14	2	2	100.0000

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