PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45301-45350 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 88.7324 | 79.7468 | 100.0000 | 33.2155 | 189 | 48 | 189 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l150_m2_e1 | homalt | 88.4680 | 79.7478 | 99.3294 | 72.4334 | 6135 | 1558 | 6073 | 41 | 36 | 87.8049 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 75.7559 | 79.7506 | 72.1424 | 75.3616 | 1087 | 276 | 1155 | 446 | 264 | 59.1928 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 86.7685 | 79.7558 | 95.1333 | 68.7830 | 14502 | 3681 | 14524 | 743 | 84 | 11.3055 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 87.2466 | 79.7847 | 96.2482 | 67.1252 | 667 | 169 | 667 | 26 | 23 | 88.4615 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 83.9649 | 79.7856 | 88.6063 | 45.8996 | 25525 | 6467 | 29373 | 3777 | 2366 | 62.6423 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 84.9987 | 79.7856 | 90.9408 | 61.8351 | 521 | 132 | 522 | 52 | 45 | 86.5385 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 88.3800 | 79.7888 | 99.0444 | 59.7268 | 14508 | 3675 | 14511 | 140 | 39 | 27.8571 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 37.8203 | 79.7927 | 24.7836 | 90.1732 | 308 | 78 | 315 | 956 | 27 | 2.8243 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | homalt | 86.3828 | 79.7980 | 94.1520 | 92.3181 | 158 | 40 | 161 | 10 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | het | 54.9434 | 79.8077 | 41.8919 | 76.8894 | 166 | 42 | 155 | 215 | 211 | 98.1395 | |
| hfeng-pmm2 | INDEL | I6_15 | HG002compoundhet | het | 79.5908 | 79.8077 | 79.3750 | 86.5997 | 166 | 42 | 127 | 33 | 33 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002compoundhet | het | 81.1158 | 79.8077 | 82.4675 | 86.8038 | 166 | 42 | 127 | 27 | 25 | 92.5926 | |
| hfeng-pmm1 | INDEL | I6_15 | HG002compoundhet | het | 80.0927 | 79.8077 | 80.3797 | 86.5646 | 166 | 42 | 127 | 31 | 29 | 93.5484 | |
| qzeng-custom | SNP | tv | map_l100_m1_e0 | * | 88.0506 | 79.8294 | 98.1596 | 77.4096 | 19559 | 4942 | 19521 | 366 | 304 | 83.0601 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002complexvar | * | 84.0504 | 79.8319 | 88.7395 | 68.1648 | 1045 | 264 | 1056 | 134 | 128 | 95.5224 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.2304 | 79.8387 | 86.9231 | 99.9093 | 99 | 25 | 113 | 17 | 5 | 29.4118 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 88.4082 | 79.8387 | 99.0385 | 99.9179 | 99 | 25 | 103 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 70.5148 | 79.8587 | 63.1285 | 77.4132 | 226 | 57 | 226 | 132 | 38 | 28.7879 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002compoundhet | het | 87.4792 | 79.8611 | 96.7041 | 73.8541 | 1380 | 348 | 1379 | 47 | 44 | 93.6170 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 80.7760 | 79.8611 | 81.7121 | 72.0348 | 230 | 58 | 210 | 47 | 30 | 63.8298 | |
| qzeng-custom | SNP | * | map_l100_m2_e0 | het | 87.9050 | 79.8638 | 97.7467 | 81.4691 | 37056 | 9343 | 36699 | 846 | 656 | 77.5414 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 87.8711 | 79.8639 | 97.6628 | 43.9139 | 587 | 148 | 585 | 14 | 14 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 87.8760 | 79.8693 | 97.6669 | 68.5714 | 1222 | 308 | 1214 | 29 | 21 | 72.4138 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 87.8760 | 79.8693 | 97.6669 | 68.5714 | 1222 | 308 | 1214 | 29 | 21 | 72.4138 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 82.5030 | 79.8704 | 85.3152 | 53.3915 | 8872 | 2236 | 10353 | 1782 | 570 | 31.9865 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 88.6525 | 79.8722 | 99.6016 | 46.2527 | 250 | 63 | 250 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 46.8164 | 79.8780 | 33.1115 | 59.9867 | 393 | 99 | 398 | 804 | 747 | 92.9104 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 82.6766 | 79.8823 | 85.6735 | 55.5568 | 14116 | 3555 | 14119 | 2361 | 2322 | 98.3482 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 82.6766 | 79.8823 | 85.6735 | 55.5568 | 14116 | 3555 | 14119 | 2361 | 2322 | 98.3482 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2468 | 79.8834 | 98.5663 | 50.7937 | 274 | 69 | 275 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2468 | 79.8834 | 98.5663 | 50.9666 | 274 | 69 | 275 | 4 | 3 | 75.0000 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 84.2675 | 79.8913 | 89.1509 | 81.5972 | 882 | 222 | 945 | 115 | 66 | 57.3913 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 88.4879 | 79.8982 | 99.1469 | 44.6823 | 13347 | 3358 | 3254 | 28 | 24 | 85.7143 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 88.4879 | 79.8982 | 99.1469 | 44.6823 | 13347 | 3358 | 3254 | 28 | 24 | 85.7143 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e1 | homalt | 86.2888 | 79.9020 | 93.7853 | 93.0913 | 163 | 41 | 166 | 11 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 87.3247 | 79.9043 | 96.2644 | 43.3225 | 334 | 84 | 335 | 13 | 7 | 53.8462 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 88.8331 | 79.9097 | 100.0000 | 43.6306 | 354 | 89 | 354 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 85.6249 | 79.9127 | 92.2166 | 76.3031 | 549 | 138 | 545 | 46 | 28 | 60.8696 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 88.6934 | 79.9189 | 99.6323 | 81.5479 | 4334 | 1089 | 4335 | 16 | 15 | 93.7500 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 88.6934 | 79.9189 | 99.6323 | 81.5479 | 4334 | 1089 | 4335 | 16 | 15 | 93.7500 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 81.5062 | 79.9189 | 83.1579 | 59.0870 | 394 | 99 | 395 | 80 | 78 | 97.5000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 84.5242 | 79.9191 | 89.6923 | 68.2772 | 593 | 149 | 583 | 67 | 46 | 68.6567 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m0_e0 | * | 83.4049 | 79.9263 | 87.2000 | 93.3581 | 434 | 109 | 436 | 64 | 4 | 6.2500 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e0 | homalt | 88.7618 | 79.9314 | 99.7857 | 88.9135 | 1398 | 351 | 1397 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 81.5683 | 79.9506 | 83.2528 | 70.9561 | 51513 | 12918 | 52192 | 10499 | 7538 | 71.7973 | |
| gduggal-snapvard | SNP | ti | HG002compoundhet | * | 79.9822 | 79.9565 | 80.0079 | 49.1293 | 13974 | 3503 | 14163 | 3539 | 1489 | 42.0740 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 87.9863 | 79.9619 | 97.8009 | 49.2660 | 1680 | 421 | 1690 | 38 | 36 | 94.7368 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | * | 85.3532 | 79.9632 | 91.5223 | 92.6622 | 870 | 218 | 1004 | 93 | 21 | 22.5806 | |
| qzeng-custom | INDEL | * | map_l100_m2_e0 | het | 83.5804 | 79.9740 | 87.5274 | 89.7430 | 1845 | 462 | 2400 | 342 | 54 | 15.7895 | |