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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 893 894 895 896 897 898 899 900 901 ... 1720 1721 » 44801-44850 / 86044 show all
mlin-fermikit	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	71.9478	78.1377	66.6667	74.2938	193	54	182	91	90	98.9011
ndellapenna-hhga	INDEL	*	map_siren	hetalt	85.8846	78.1377	95.3368	88.2532	193	54	184	9	5	55.5556
gduggal-snapplat	INDEL	I1_5	func_cds	homalt	83.8633	78.1513	90.4762	30.4636	93	26	95	10	1	10.0000
gduggal-snapplat	INDEL	I1_5	map_l150_m2_e1	*	82.8676	78.1544	88.1857	95.5224	415	116	418	56	2	3.5714
ghariani-varprowl	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	het	72.3404	78.1609	67.3267	99.9209	68	19	68	33	18	54.5455
rpoplin-dv42	INDEL	D16_PLUS	map_l100_m1_e0	*	84.4720	78.1609	91.8919	88.8218	68	19	68	6	3	50.0000
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	het	87.7419	78.1609	100.0000	99.8911	68	19	68	0	0
gduggal-snapplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	78.7301	78.1671	79.3012	91.5881	7139	1994	7172	1872	98	5.2350
gduggal-snapplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	78.7301	78.1671	79.3012	91.5881	7139	1994	7172	1872	98	5.2350
ciseli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	76.0628	78.1719	74.0645	72.1724	573	160	574	201	147	73.1343
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	82.8484	78.1915	88.0952	60.0000	147	41	148	20	19	95.0000
gduggal-snapplat	INDEL	I1_5	map_l100_m1_e0	*	82.4097	78.1927	87.1074	91.8447	1047	292	1054	156	8	5.1282
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	83.7423	78.1955	90.1361	42.6621	1040	290	1060	116	85	73.2759
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	54.8356	78.1955	42.2222	77.3642	104	29	95	130	109	83.8462
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	84.4611	78.1955	91.8182	83.7278	104	29	101	9	9	100.0000
qzeng-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	82.4185	78.1955	87.1237	60.0801	104	29	521	77	54	70.1299
ciseli-custom	SNP	ti	map_l125_m2_e1	*	82.1337	78.2100	86.4719	77.2907	23908	6661	23887	3737	990	26.4918
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	85.4054	78.2178	94.0476	93.8641	79	22	79	5	0	0.0000
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	86.9955	78.2258	97.9798	90.7216	97	27	97	2	0	0.0000
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	86.9955	78.2258	97.9798	90.3131	97	27	97	2	1	50.0000
gduggal-snapplat	INDEL	D1_5	map_l125_m2_e1	homalt	87.2327	78.2258	98.5836	89.4248	291	81	348	5	0	0.0000
gduggal-snapplat	INDEL	I1_5	map_l150_m2_e1	het	81.4686	78.2334	84.9829	96.0923	248	69	249	44	1	2.2727
anovak-vg	SNP	tv	map_l100_m0_e0	homalt	87.5215	78.2371	99.3060	64.7976	3009	837	3005	21	17	80.9524
qzeng-custom	INDEL	*	map_l100_m1_e0	homalt	85.1872	78.2396	93.4890	80.8459	960	267	1321	92	13	14.1304
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	84.7851	78.2485	92.5134	54.4520	1644	457	1557	126	122	96.8254
ciseli-custom	SNP	ti	map_l100_m0_e0	*	82.2845	78.2555	86.7509	73.7443	17037	4734	17024	2600	753	28.9615
ckim-gatk	SNP	ti	map_l100_m0_e0	het	86.7938	78.2593	97.4176	85.5089	10943	3040	10940	290	35	12.0690
ckim-dragen	INDEL	*	map_l150_m2_e1	hetalt	87.8049	78.2609	100.0000	95.4774	18	5	18	0	0
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	87.8049	78.2609	100.0000	58.7786	54	15	54	0	0
jli-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	87.8049	78.2609	100.0000	75.0000	18	5	20	0	0
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	87.8049	78.2609	100.0000	87.5000	54	15	1	0	0
qzeng-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	hetalt		78.2609		100.0000	18	5	0	0	0
gduggal-snapplat	INDEL	D1_5	map_l250_m0_e0	*	82.6230	78.2609	87.5000	98.7626	36	10	42	6	0	0.0000
gduggal-snapvard	INDEL	D6_15	segdup	het	71.7253	78.2609	66.1972	93.2445	72	20	94	48	37	77.0833
gduggal-bwaplat	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	87.7025	78.2609	99.7349	69.6723	7902	2195	7900	21	19	90.4762
egarrison-hhga	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	79.7819	78.2631	81.3608	56.9182	3118	866	3121	715	658	92.0280
ckim-isaac	SNP	*	HG002compoundhet	het	87.1652	78.2691	98.3428	43.2349	11097	3081	11631	196	36	18.3673
qzeng-custom	SNP	tv	map_l100_m1_e0	homalt	87.4842	78.2705	99.1566	59.7237	7078	1965	7054	60	60	100.0000
ciseli-custom	SNP	*	map_l250_m1_e0	homalt	80.5510	78.2785	82.9594	86.9401	1928	535	1923	395	279	70.6329
gduggal-bwafb	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	het	83.6326	78.2787	89.7727	73.4807	382	106	474	54	50	92.5926
anovak-vg	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	64.1521	78.2895	54.3396	87.4882	119	33	144	121	38	31.4050
gduggal-bwaplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	86.6565	78.2921	97.0220	41.1897	5345	1482	5343	164	163	99.3902
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	80.5396	78.3026	82.9082	65.7841	978	271	975	201	201	100.0000
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	80.5396	78.3026	82.9082	65.7841	978	271	975	201	201	100.0000
qzeng-custom	INDEL	D1_5	map_l125_m2_e0	*	86.6114	78.3027	96.8927	91.2636	895	248	1029	33	27	81.8182
gduggal-snapplat	INDEL	D1_5	HG002complexvar	*	83.2560	78.3158	88.8615	63.4989	25621	7094	29885	3746	907	24.2125
mlin-fermikit	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	87.8398	78.3163	100.0000	38.0563	614	170	682	0	0
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	85.8383	78.3200	94.9533	28.7854	6340	1755	2032	108	63	58.3333
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	*	87.1595	78.3217	98.2456	92.8750	112	31	112	2	1	50.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	*	86.8217	78.3217	97.3913	92.9405	112	31	112	3	1	33.3333

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