PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43851-43900 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D6_15 | HG002complexvar | het | 77.7392 | 75.0641 | 80.6119 | 50.1246 | 2342 | 778 | 2582 | 621 | 443 | 71.3366 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.1767 | 75.0649 | 93.2540 | 64.2807 | 289 | 96 | 470 | 34 | 7 | 20.5882 | |
| gduggal-snapplat | INDEL | I1_5 | segdup | * | 78.0848 | 75.0708 | 81.3508 | 96.7377 | 795 | 264 | 807 | 185 | 6 | 3.2432 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 85.2043 | 75.0733 | 98.4962 | 64.0541 | 256 | 85 | 262 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | HG002complexvar | homalt | 80.0982 | 75.0865 | 85.8268 | 71.4607 | 217 | 72 | 218 | 36 | 33 | 91.6667 | |
| ghariani-varprowl | INDEL | D16_PLUS | HG002complexvar | homalt | 80.0982 | 75.0865 | 85.8268 | 71.4927 | 217 | 72 | 218 | 36 | 33 | 91.6667 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | * | 79.2695 | 75.0926 | 83.9385 | 81.3448 | 15403 | 5109 | 15396 | 2946 | 753 | 25.5601 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.0896 | 75.1071 | 81.3187 | 71.3321 | 1578 | 523 | 1554 | 357 | 352 | 98.5994 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | * | 79.2822 | 75.1146 | 83.9394 | 81.3843 | 15566 | 5157 | 15559 | 2977 | 763 | 25.6298 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.3755 | 75.1159 | 98.8810 | 48.3447 | 972 | 322 | 972 | 11 | 10 | 90.9091 | |
| ckim-vqsr | SNP | * | map_l100_m2_e1 | het | 85.4225 | 75.1205 | 98.9994 | 84.8723 | 35230 | 11668 | 35222 | 356 | 13 | 3.6517 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 80.4824 | 75.1220 | 86.6667 | 77.3014 | 154 | 51 | 156 | 24 | 18 | 75.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 80.4824 | 75.1220 | 86.6667 | 77.3014 | 154 | 51 | 156 | 24 | 18 | 75.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | homalt | 84.6016 | 75.1366 | 96.7949 | 89.4755 | 550 | 182 | 604 | 20 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e0 | * | 85.4172 | 75.1462 | 98.9403 | 84.3863 | 1028 | 340 | 1027 | 11 | 5 | 45.4545 | |
| astatham-gatk | SNP | * | map_l125_m1_e0 | het | 85.6838 | 75.1515 | 99.6496 | 79.7424 | 21337 | 7055 | 21331 | 75 | 27 | 36.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 84.2857 | 75.1592 | 95.9350 | 54.2751 | 118 | 39 | 118 | 5 | 2 | 40.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 82.5487 | 75.1600 | 91.5487 | 63.9730 | 3994 | 1320 | 4008 | 370 | 366 | 98.9189 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 70.4680 | 75.1615 | 66.3261 | 61.3642 | 2908 | 961 | 3246 | 1648 | 1139 | 69.1141 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | het | 84.1017 | 75.1633 | 95.4530 | 91.0507 | 5523 | 1825 | 5521 | 263 | 7 | 2.6616 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.7527 | 75.1764 | 99.7922 | 61.3457 | 23125 | 7636 | 23046 | 48 | 38 | 79.1667 | |
| anovak-vg | SNP | * | map_l125_m0_e0 | homalt | 85.5602 | 75.1937 | 99.2421 | 70.8421 | 5047 | 1665 | 4976 | 38 | 33 | 86.8421 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 85.8407 | 75.1938 | 100.0000 | 69.0590 | 194 | 64 | 194 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_siren | het | 83.7074 | 75.1996 | 94.3858 | 76.9241 | 3390 | 1118 | 3396 | 202 | 141 | 69.8020 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | hetalt | 83.7547 | 75.2000 | 94.5055 | 89.4798 | 94 | 31 | 86 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | * | map_l100_m2_e0 | hetalt | 85.8447 | 75.2000 | 100.0000 | 91.2621 | 94 | 31 | 27 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | het | 80.6812 | 75.2060 | 87.0161 | 93.7402 | 1004 | 331 | 1079 | 161 | 24 | 14.9068 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 80.5715 | 75.2066 | 86.7606 | 55.0063 | 182 | 60 | 308 | 47 | 45 | 95.7447 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.0439 | 75.2066 | 72.9167 | 67.8332 | 728 | 240 | 630 | 234 | 184 | 78.6325 | |
| gduggal-snapplat | INDEL | * | segdup | homalt | 82.9294 | 75.2083 | 92.4171 | 94.6528 | 722 | 238 | 780 | 64 | 13 | 20.3125 | |
| anovak-vg | SNP | tv | HG002compoundhet | * | 74.6577 | 75.2101 | 74.1133 | 50.0629 | 6711 | 2212 | 7063 | 2467 | 1646 | 66.7207 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | * | 83.1665 | 75.2137 | 93.0000 | 84.8485 | 88 | 29 | 93 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002compoundhet | * | 84.3510 | 75.2217 | 96.0024 | 42.9312 | 1612 | 531 | 1585 | 66 | 64 | 96.9697 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.9521 | 75.2294 | 97.5610 | 27.3958 | 656 | 216 | 680 | 17 | 17 | 100.0000 | |
| ckim-gatk | SNP | ti | map_l125_m2_e1 | * | 85.1950 | 75.2331 | 98.1978 | 84.5085 | 22998 | 7571 | 22994 | 422 | 45 | 10.6635 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 81.8133 | 75.2350 | 89.6520 | 58.5736 | 3761 | 1238 | 3942 | 455 | 448 | 98.4615 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.8133 | 75.2350 | 89.6520 | 58.5736 | 3761 | 1238 | 3942 | 455 | 448 | 98.4615 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e1 | * | 85.1656 | 75.2364 | 98.1141 | 84.6685 | 22999 | 7570 | 22995 | 442 | 41 | 9.2760 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.6369 | 75.2427 | 99.3631 | 51.2422 | 155 | 51 | 156 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 83.9718 | 75.2508 | 94.9791 | 93.8067 | 225 | 74 | 227 | 12 | 1 | 8.3333 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 75.2577 | 0.0000 | 0.0000 | 73 | 24 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | * | 85.4353 | 75.2688 | 98.7770 | 84.4363 | 1050 | 345 | 1050 | 13 | 5 | 38.4615 | |
| jmaeng-gatk | SNP | ti | map_l150_m1_e0 | het | 84.7465 | 75.2789 | 96.9381 | 89.5763 | 9312 | 3058 | 9308 | 294 | 33 | 11.2245 | |
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 81.4636 | 75.3003 | 88.7258 | 57.0269 | 7585 | 2488 | 7374 | 937 | 772 | 82.3906 | |
| egarrison-hhga | INDEL | * | map_siren | hetalt | 84.9102 | 75.3036 | 97.3262 | 88.3489 | 186 | 61 | 182 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 80.4374 | 75.3086 | 86.3158 | 64.6840 | 61 | 20 | 82 | 13 | 13 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 72.3231 | 75.3086 | 69.5652 | 73.6390 | 61 | 20 | 64 | 28 | 28 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | * | hetalt | 85.7294 | 75.3098 | 99.4953 | 51.3953 | 1580 | 518 | 1577 | 8 | 8 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l100_m0_e0 | * | 84.6327 | 75.3158 | 96.5801 | 84.0828 | 8348 | 2736 | 8331 | 295 | 249 | 84.4068 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e1 | homalt | 84.7865 | 75.3230 | 96.9697 | 90.1183 | 583 | 191 | 640 | 20 | 0 | 0.0000 | |