PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43501-43550 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 77.4194 | 75.0000 | 80.0000 | 72.2222 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | het | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 88.9831 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | het | 85.7143 | 75.0000 | 100.0000 | 94.4444 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.6903 | 6 | 2 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 95.0413 | 6 | 2 | 6 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | HG002compoundhet | homalt | 15.7895 | 75.0000 | 8.8235 | 49.2537 | 6 | 2 | 6 | 62 | 58 | 93.5484 | |
| jpowers-varprowl | INDEL | D16_PLUS | decoy | het | 85.7143 | 75.0000 | 100.0000 | 99.4208 | 3 | 1 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 66.6667 | 3 | 1 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 28.5714 | 75.0000 | 17.6471 | 59.5238 | 6 | 2 | 6 | 28 | 28 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4106 | 3 | 1 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4163 | 3 | 1 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.7692 | 75.0000 | 87.5000 | 98.3146 | 21 | 7 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4163 | 3 | 1 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | * | 75.0000 | 75.0000 | 75.0000 | 99.5863 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9682 | 3 | 1 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 75.0000 | 85.7143 | 99.4332 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 90.3226 | 9 | 3 | 9 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 78.9474 | 75.0000 | 83.3333 | 90.9091 | 6 | 2 | 5 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5000 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m0_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.0594 | 6 | 2 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 88.7931 | 12 | 4 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 95.8042 | 6 | 2 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 95.9732 | 6 | 2 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 83.1683 | 75.0000 | 93.3333 | 99.9306 | 12 | 4 | 14 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 75.0000 | 85.7143 | 78.7879 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 86.3636 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | decoy | het | 85.7143 | 75.0000 | 100.0000 | 98.4536 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 86.9565 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 88.2883 | 12 | 4 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 88.4956 | 12 | 4 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 85.7143 | 75.0000 | 100.0000 | 95.9459 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 98.4076 | 6 | 2 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m0_e0 | het | 85.7143 | 75.0000 | 100.0000 | 96.5116 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 85.0898 | 75.0000 | 98.3165 | 64.4737 | 285 | 95 | 292 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.0874 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 42.8571 | 3 | 1 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 94.5455 | 3 | 1 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 91.1765 | 3 | 1 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 75.0000 | 75.0000 | 75.0000 | 97.5232 | 6 | 2 | 6 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 75.0000 | 60.0000 | 97.9167 | 3 | 1 | 3 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 95.6522 | 3 | 1 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 72.7273 | 75.0000 | 70.5882 | 76.0563 | 12 | 4 | 12 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 75.0000 | 75.0000 | 75.0000 | 69.2308 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 74.1935 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | segdup | het | 76.5957 | 75.0000 | 78.2609 | 93.5393 | 18 | 6 | 18 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 77.7563 | 75.0000 | 80.7229 | 62.2727 | 69 | 23 | 67 | 16 | 16 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m0_e0 | homalt | 81.8182 | 75.0000 | 90.0000 | 80.3922 | 9 | 3 | 9 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 83.3333 | 75.0000 | 93.7500 | 99.9211 | 12 | 4 | 15 | 1 | 1 | 100.0000 | |