PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43451-43500 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 96.0000 | 3 | 1 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 76.1488 | 75.0000 | 77.3333 | 99.5926 | 15 | 5 | 58 | 17 | 14 | 82.3529 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 71.5596 | 75.0000 | 68.4211 | 65.4545 | 39 | 13 | 39 | 18 | 18 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 94.8052 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 95.1220 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e1 | * | 82.5000 | 75.0000 | 91.6667 | 90.5138 | 21 | 7 | 22 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 75.0000 | 75.0000 | 95.1807 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m1_e0 | * | 75.0000 | 75.0000 | 75.0000 | 95.3488 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 58.3333 | 9 | 3 | 10 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | map_l150_m1_e0 | hetalt | 76.9231 | 75.0000 | 78.9474 | 88.6228 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e0 | hetalt | 76.9231 | 75.0000 | 78.9474 | 90.2062 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e1 | hetalt | 76.9231 | 75.0000 | 78.9474 | 90.2564 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | map_l125_m0_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 87.3016 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 95.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | hetalt | 76.9231 | 75.0000 | 78.9474 | 88.6228 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l150_m2_e0 | hetalt | 76.9231 | 75.0000 | 78.9474 | 90.2062 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l150_m2_e1 | hetalt | 76.9231 | 75.0000 | 78.9474 | 90.2564 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 64.8649 | 75.0000 | 57.1429 | 99.8626 | 9 | 3 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | D1_5 | decoy | * | 77.4194 | 75.0000 | 80.0000 | 99.9600 | 3 | 1 | 4 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 6 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 70.5882 | 75.0000 | 66.6667 | 98.5849 | 3 | 1 | 2 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m0_e0 | het | 77.4194 | 75.0000 | 80.0000 | 98.1884 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m1_e0 | het | 54.5455 | 75.0000 | 42.8571 | 93.3544 | 3 | 1 | 9 | 12 | 8 | 66.6667 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 75.0000 | 25.0000 | 97.0516 | 6 | 2 | 3 | 9 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 34.3511 | 75.0000 | 22.2772 | 90.2651 | 93 | 31 | 90 | 314 | 7 | 2.2293 | |
| ghariani-varprowl | INDEL | D16_PLUS | HG002compoundhet | homalt | 16.0000 | 75.0000 | 8.9552 | 50.7353 | 6 | 2 | 6 | 61 | 57 | 93.4426 | |
| ghariani-varprowl | INDEL | D16_PLUS | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 66.6667 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 27.2727 | 75.0000 | 16.6667 | 61.7021 | 6 | 2 | 6 | 30 | 30 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4094 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4152 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4152 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 75.0000 | 60.0000 | 99.5155 | 3 | 1 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9798 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 90.3226 | 9 | 3 | 9 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | func_cds | * | 81.8182 | 75.0000 | 90.0000 | 65.5172 | 9 | 3 | 9 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 75.0000 | 75.0000 | 75.0000 | 70.3704 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 79.6040 | 75.0000 | 84.8101 | 64.2534 | 69 | 23 | 67 | 12 | 12 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m0_e0 | homalt | 81.8182 | 75.0000 | 90.0000 | 81.4815 | 9 | 3 | 9 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.0000 | 75.0000 | 75.0000 | 97.8349 | 12 | 4 | 12 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9884 | 3 | 1 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l250_m1_e0 | homalt | 84.6473 | 75.0000 | 97.1429 | 97.2332 | 33 | 11 | 34 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 85.7143 | 75.0000 | 100.0000 | 96.6292 | 33 | 11 | 33 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 78.9474 | 75.0000 | 83.3333 | 88.8889 | 6 | 2 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | func_cds | het | 77.0270 | 75.0000 | 79.1667 | 35.1351 | 18 | 6 | 19 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 60.0000 | 75.0000 | 50.0000 | 80.0000 | 3 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 77.4194 | 75.0000 | 80.0000 | 68.7500 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 77.4194 | 75.0000 | 80.0000 | 72.2222 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |