PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42451-42500 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 73.5287 | 71.5370 | 75.6345 | 65.0089 | 377 | 150 | 298 | 96 | 96 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e0 | * | 82.9800 | 71.5405 | 98.7743 | 92.0775 | 1370 | 545 | 1370 | 17 | 7 | 41.1765 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 78.6619 | 71.5415 | 87.3563 | 60.2740 | 1267 | 504 | 304 | 44 | 44 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l150_m0_e0 | het | 80.0048 | 71.5543 | 90.7186 | 97.0277 | 244 | 97 | 303 | 31 | 16 | 51.6129 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 52.5500 | 71.5640 | 41.5188 | 24.1862 | 151 | 60 | 1170 | 1648 | 1641 | 99.5752 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.4286 | 71.5686 | 100.0000 | 93.4470 | 73 | 29 | 73 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 46.3373 | 71.5686 | 34.2593 | 33.5385 | 73 | 29 | 74 | 142 | 132 | 92.9577 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.4859 | 71.5686 | 97.3333 | 92.8910 | 73 | 29 | 73 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 66.2377 | 71.5690 | 61.6456 | 93.1383 | 1893 | 752 | 1903 | 1184 | 39 | 3.2939 | |
| qzeng-custom | INDEL | * | map_l150_m2_e1 | * | 81.2984 | 71.5775 | 94.0746 | 94.0057 | 1030 | 409 | 1286 | 81 | 39 | 48.1481 | |
| gduggal-bwaplat | INDEL | * | * | hetalt | 82.4487 | 71.6091 | 97.1551 | 71.6669 | 18072 | 7165 | 18066 | 529 | 513 | 96.9754 | |
| ciseli-custom | SNP | tv | map_l150_m2_e1 | * | 76.7644 | 71.6136 | 82.7136 | 82.0895 | 8237 | 3265 | 8230 | 1720 | 402 | 23.3721 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 22.0217 | 71.6216 | 13.0112 | 43.9194 | 106 | 42 | 105 | 702 | 699 | 99.5726 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | homalt | 83.4646 | 71.6216 | 100.0000 | 91.9283 | 106 | 42 | 126 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l125_m1_e0 | homalt | 72.3589 | 71.6332 | 73.0994 | 78.0347 | 250 | 99 | 250 | 92 | 86 | 93.4783 | |
| gduggal-bwaplat | INDEL | * | HG002compoundhet | hetalt | 83.3202 | 71.6362 | 99.5583 | 64.0234 | 18038 | 7142 | 18031 | 80 | 66 | 82.5000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e1 | homalt | 83.4783 | 71.6418 | 100.0000 | 81.0924 | 48 | 19 | 45 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 77.1866 | 71.6422 | 83.6612 | 80.1878 | 23811 | 9425 | 27896 | 5448 | 1746 | 32.0485 | |
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | * | 83.2803 | 71.6572 | 99.4040 | 79.8206 | 34346 | 13585 | 34357 | 206 | 64 | 31.0680 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e0 | homalt | 82.8773 | 71.6667 | 98.2456 | 94.4714 | 43 | 17 | 56 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e1 | homalt | 82.8881 | 71.6667 | 98.2759 | 94.5283 | 43 | 17 | 57 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e0 | homalt | 75.4386 | 71.6667 | 79.6296 | 95.8365 | 43 | 17 | 43 | 11 | 8 | 72.7273 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e1 | homalt | 75.4386 | 71.6667 | 79.6296 | 95.9276 | 43 | 17 | 43 | 11 | 8 | 72.7273 | |
| qzeng-custom | SNP | * | map_l125_m1_e0 | homalt | 83.2331 | 71.6711 | 99.2430 | 64.3421 | 12116 | 4789 | 11930 | 91 | 90 | 98.9011 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 83.1319 | 71.6717 | 98.9545 | 46.3244 | 1895 | 749 | 1893 | 20 | 17 | 85.0000 | |
| gduggal-snapplat | INDEL | * | func_cds | homalt | 81.6523 | 71.6814 | 94.8454 | 31.4488 | 162 | 64 | 184 | 10 | 1 | 10.0000 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | het | 80.8118 | 71.6959 | 92.5834 | 95.0292 | 613 | 242 | 749 | 60 | 29 | 48.3333 | |
| qzeng-custom | INDEL | * | map_l250_m0_e0 | het | 76.6159 | 71.6981 | 82.2581 | 99.2102 | 38 | 15 | 51 | 11 | 6 | 54.5455 | |
| anovak-vg | INDEL | * | map_l250_m0_e0 | het | 64.3289 | 71.6981 | 58.3333 | 98.2533 | 38 | 15 | 42 | 30 | 12 | 40.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m1_e0 | * | 77.9487 | 71.6981 | 85.3933 | 98.3386 | 76 | 30 | 76 | 13 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.9173 | 71.6981 | 92.8571 | 63.4783 | 38 | 15 | 39 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 77.4599 | 71.6987 | 84.2278 | 56.4520 | 11527 | 4550 | 21313 | 3991 | 3815 | 95.5901 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 77.4599 | 71.6987 | 84.2278 | 56.4520 | 11527 | 4550 | 21313 | 3991 | 3815 | 95.5901 | |
| gduggal-bwaplat | INDEL | D16_PLUS | * | * | 82.9287 | 71.7129 | 98.3034 | 72.8727 | 4865 | 1919 | 4867 | 84 | 65 | 77.3810 | |
| gduggal-snapplat | INDEL | I1_5 | HG002complexvar | * | 77.0714 | 71.7352 | 83.2654 | 65.6966 | 23933 | 9430 | 24301 | 4884 | 375 | 7.6781 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 79.6846 | 71.7362 | 89.6138 | 68.4553 | 2698 | 1063 | 2692 | 312 | 233 | 74.6795 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 79.6846 | 71.7362 | 89.6138 | 68.4553 | 2698 | 1063 | 2692 | 312 | 233 | 74.6795 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.5000 | 71.7391 | 97.0588 | 60.2339 | 66 | 26 | 66 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 83.3333 | 71.7391 | 99.3976 | 70.7746 | 165 | 65 | 165 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | segdup | het | 82.4566 | 71.7391 | 96.9388 | 89.5075 | 66 | 26 | 95 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 77.6732 | 71.7391 | 84.6774 | 54.4118 | 66 | 26 | 105 | 19 | 19 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.9522 | 71.7391 | 87.7778 | 55.4455 | 66 | 26 | 79 | 11 | 10 | 90.9091 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 83.4117 | 71.7452 | 99.6094 | 51.7891 | 259 | 102 | 255 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | * | * | 75.4633 | 71.7500 | 79.5820 | 47.2482 | 18721 | 7371 | 18658 | 4787 | 4643 | 96.9919 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 77.8604 | 71.7514 | 85.1064 | 55.9513 | 254 | 100 | 400 | 70 | 67 | 95.7143 | |
| qzeng-custom | SNP | ti | map_l125_m2_e0 | homalt | 83.3237 | 71.7644 | 99.3217 | 66.9963 | 8151 | 3207 | 8054 | 55 | 54 | 98.1818 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | * | 72.3984 | 71.7647 | 73.0435 | 88.8023 | 61 | 24 | 84 | 31 | 20 | 64.5161 | |
| qzeng-custom | INDEL | * | map_l125_m0_e0 | * | 81.0033 | 71.7687 | 92.9654 | 94.3128 | 633 | 249 | 859 | 65 | 24 | 36.9231 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 83.2726 | 71.7728 | 99.1604 | 47.4357 | 3425 | 1347 | 3425 | 29 | 27 | 93.1034 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 79.2963 | 71.7737 | 88.5804 | 40.3166 | 9894 | 3891 | 10720 | 1382 | 1368 | 98.9870 | |