PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42001-42050 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D6_15 | HG002compoundhet | * | 81.3435 | 69.7154 | 97.6272 | 45.9650 | 6296 | 2735 | 6295 | 153 | 109 | 71.2418 | |
| qzeng-custom | INDEL | * | map_l125_m0_e0 | homalt | 80.6569 | 69.7183 | 95.6667 | 90.1704 | 198 | 86 | 287 | 13 | 4 | 30.7692 | |
| mlin-fermikit | INDEL | D1_5 | HG002compoundhet | * | 74.1830 | 69.7262 | 79.2484 | 64.3487 | 8531 | 3704 | 8520 | 2231 | 2171 | 97.3106 | |
| jmaeng-gatk | SNP | tv | map_l100_m1_e0 | homalt | 82.1629 | 69.7335 | 99.9841 | 67.6746 | 6306 | 2737 | 6306 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | * | * | * | 70.4960 | 69.7491 | 71.2591 | 54.1876 | 240315 | 104227 | 248606 | 100270 | 81436 | 81.2167 | |
| gduggal-snapvard | INDEL | D1_5 | HG002compoundhet | homalt | 75.8563 | 69.7595 | 83.1210 | 54.7550 | 203 | 88 | 261 | 53 | 49 | 92.4528 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.8304 | 69.7614 | 98.9490 | 45.2532 | 1871 | 811 | 1883 | 20 | 20 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l100_m2_e1 | hetalt | 82.1918 | 69.7674 | 100.0000 | 88.8476 | 30 | 13 | 30 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m2_e1 | hetalt | 82.1918 | 69.7674 | 100.0000 | 88.8476 | 30 | 13 | 30 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 81.7466 | 69.7674 | 98.6920 | 34.2284 | 2460 | 1066 | 2490 | 33 | 24 | 72.7273 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 81.7466 | 69.7674 | 98.6920 | 34.2284 | 2460 | 1066 | 2490 | 33 | 24 | 72.7273 | |
| anovak-vg | SNP | tv | map_l250_m2_e1 | homalt | 81.8854 | 69.7674 | 99.0977 | 89.2430 | 660 | 286 | 659 | 6 | 4 | 66.6667 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 81.0811 | 69.7674 | 96.7742 | 90.1899 | 30 | 13 | 30 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e1 | hetalt | 81.0811 | 69.7674 | 96.7742 | 90.1899 | 30 | 13 | 30 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 59.7902 | 69.7674 | 52.3096 | 34.3980 | 420 | 182 | 419 | 382 | 382 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 80.1806 | 69.7709 | 94.2412 | 74.1188 | 944 | 409 | 1211 | 74 | 69 | 93.2432 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 81.9762 | 69.7710 | 99.3570 | 62.1268 | 4143 | 1795 | 4172 | 27 | 27 | 100.0000 | |
| anovak-vg | INDEL | * | map_l250_m2_e0 | * | 67.7533 | 69.7885 | 65.8333 | 96.4399 | 231 | 100 | 237 | 123 | 63 | 51.2195 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 58.9966 | 69.7941 | 51.0924 | 33.9623 | 305 | 132 | 304 | 291 | 291 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | HG002compoundhet | * | 78.6319 | 69.8154 | 89.9971 | 31.6672 | 6127 | 2649 | 6127 | 681 | 634 | 93.0984 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | * | 74.8886 | 69.8182 | 80.7531 | 82.6560 | 192 | 83 | 193 | 46 | 35 | 76.0870 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 79.3169 | 69.8276 | 91.7910 | 57.6285 | 324 | 140 | 492 | 44 | 43 | 97.7273 | |
| ckim-isaac | INDEL | I16_PLUS | * | het | 78.5832 | 69.8308 | 89.8441 | 60.3038 | 1898 | 820 | 1902 | 215 | 129 | 60.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | * | 75.9931 | 69.8413 | 83.3333 | 84.8527 | 88 | 38 | 90 | 18 | 12 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.5245 | 69.8462 | 97.8923 | 31.4607 | 454 | 196 | 418 | 9 | 8 | 88.8889 | |
| qzeng-custom | INDEL | * | map_l150_m2_e0 | homalt | 81.0641 | 69.8545 | 96.5591 | 89.8494 | 336 | 145 | 449 | 16 | 9 | 56.2500 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 75.7026 | 69.8630 | 82.6075 | 47.3461 | 1377 | 594 | 3073 | 647 | 636 | 98.2998 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 75.7026 | 69.8630 | 82.6075 | 47.3461 | 1377 | 594 | 3073 | 647 | 636 | 98.2998 | |
| ckim-isaac | INDEL | * | map_siren | homalt | 82.0615 | 69.8682 | 99.4105 | 72.7551 | 1855 | 800 | 1855 | 11 | 7 | 63.6364 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.6253 | 69.8745 | 98.1273 | 41.9144 | 835 | 360 | 786 | 15 | 11 | 73.3333 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 81.7599 | 69.8795 | 98.5075 | 30.9278 | 58 | 25 | 66 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l250_m2_e0 | het | 78.8333 | 69.8969 | 90.3898 | 96.1692 | 1356 | 584 | 1345 | 143 | 116 | 81.1189 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 69.0860 | 69.8980 | 68.2927 | 72.8277 | 1507 | 649 | 1512 | 702 | 277 | 39.4587 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | het | 81.9608 | 69.8997 | 99.0521 | 91.9924 | 209 | 90 | 209 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | * | 72.5984 | 69.9029 | 75.5102 | 84.8765 | 72 | 31 | 111 | 36 | 22 | 61.1111 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 72.2264 | 69.9029 | 74.7097 | 69.5601 | 576 | 248 | 579 | 196 | 192 | 97.9592 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m0_e0 | * | 72.3618 | 69.9029 | 75.0000 | 88.7588 | 72 | 31 | 72 | 24 | 21 | 87.5000 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | * | 81.7169 | 69.9148 | 98.3127 | 84.3697 | 2626 | 1130 | 2622 | 45 | 21 | 46.6667 | |
| ckim-isaac | INDEL | * | map_l100_m2_e0 | * | 81.7339 | 69.9161 | 98.3594 | 84.3176 | 2582 | 1111 | 2578 | 43 | 21 | 48.8372 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 81.6262 | 69.9242 | 98.0323 | 76.4744 | 2490 | 1071 | 2491 | 50 | 39 | 78.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.3056 | 69.9317 | 100.0000 | 33.4008 | 307 | 132 | 329 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 78.6765 | 69.9346 | 89.9160 | 64.3713 | 107 | 46 | 107 | 12 | 10 | 83.3333 | |
| ckim-isaac | INDEL | I6_15 | HG002compoundhet | hetalt | 82.1207 | 69.9426 | 99.4336 | 21.1377 | 5971 | 2566 | 5969 | 34 | 23 | 67.6471 | |
| ckim-isaac | INDEL | I6_15 | * | hetalt | 81.9509 | 69.9567 | 98.9089 | 28.8855 | 5982 | 2569 | 5983 | 66 | 52 | 78.7879 | |
| anovak-vg | INDEL | * | map_l250_m2_e1 | * | 67.7462 | 69.9700 | 65.6593 | 96.4861 | 233 | 100 | 239 | 125 | 63 | 50.4000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m1_e0 | het | 81.7401 | 69.9725 | 98.2659 | 88.4897 | 508 | 218 | 510 | 9 | 3 | 33.3333 | |
| qzeng-custom | SNP | tv | map_l250_m2_e1 | het | 78.9288 | 69.9746 | 90.5109 | 96.1912 | 1375 | 590 | 1364 | 143 | 116 | 81.1189 | |
| qzeng-custom | SNP | ti | map_l100_m2_e0 | hetalt | 82.3529 | 70.0000 | 100.0000 | 88.3978 | 21 | 9 | 21 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m1_e0 | het | 77.2075 | 70.0000 | 86.0697 | 98.2587 | 133 | 57 | 173 | 28 | 15 | 53.5714 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 70.0000 | 0.0000 | 0.0000 | 21 | 9 | 0 | 0 | 0 | ||