PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41801-41850 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | * | 81.3480 | 68.8368 | 99.4174 | 84.4949 | 17404 | 7879 | 17405 | 102 | 20 | 19.6078 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.1243 | 68.8494 | 98.7257 | 59.8978 | 1472 | 666 | 1472 | 19 | 4 | 21.0526 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 80.0693 | 68.8525 | 95.6522 | 51.5789 | 42 | 19 | 88 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | het | 71.7949 | 68.8525 | 75.0000 | 88.1104 | 42 | 19 | 42 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | het | 71.7949 | 68.8525 | 75.0000 | 88.3090 | 42 | 19 | 42 | 14 | 14 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | het | 74.3678 | 68.8533 | 80.8425 | 84.6368 | 8869 | 4012 | 8866 | 2101 | 62 | 2.9510 | |
| jmaeng-gatk | SNP | ti | map_l125_m0_e0 | het | 80.4521 | 68.8612 | 96.7347 | 90.5884 | 5690 | 2573 | 5688 | 192 | 21 | 10.9375 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.4742 | 68.8666 | 91.1972 | 34.5622 | 480 | 217 | 518 | 50 | 47 | 94.0000 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e1 | homalt | 75.6197 | 68.8710 | 83.8347 | 52.0014 | 12737 | 5757 | 12737 | 2456 | 2363 | 96.2134 | |
| qzeng-custom | INDEL | * | map_l150_m0_e0 | * | 78.8292 | 68.8716 | 92.1529 | 96.4092 | 354 | 160 | 458 | 39 | 19 | 48.7179 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e0 | * | 80.7195 | 68.8748 | 97.4842 | 88.8293 | 21938 | 9914 | 21932 | 566 | 41 | 7.2438 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 80.3149 | 68.8830 | 96.2963 | 71.1384 | 518 | 234 | 520 | 20 | 19 | 95.0000 | |
| mlin-fermikit | INDEL | I6_15 | segdup | hetalt | 81.5789 | 68.8889 | 100.0000 | 87.8906 | 31 | 14 | 31 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 72.0930 | 68.8889 | 75.6098 | 76.1628 | 31 | 14 | 31 | 10 | 10 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | het | 74.4004 | 68.8974 | 80.8587 | 84.6760 | 8967 | 4048 | 8964 | 2122 | 62 | 2.9218 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 34.5038 | 68.9034 | 23.0141 | 48.5298 | 421 | 190 | 423 | 1415 | 1414 | 99.9293 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 81.2948 | 68.9150 | 99.0964 | 84.0614 | 235 | 106 | 329 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | * | map_l150_m0_e0 | het | 69.8552 | 68.9150 | 70.8215 | 94.2917 | 235 | 106 | 250 | 103 | 35 | 33.9806 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.7663 | 68.9189 | 12.2249 | 46.1133 | 102 | 46 | 100 | 718 | 715 | 99.5822 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 81.0596 | 68.9189 | 98.3923 | 80.6832 | 306 | 138 | 306 | 5 | 1 | 20.0000 | |
| ckim-isaac | SNP | * | map_l100_m1_e0 | het | 81.5197 | 68.9213 | 99.7544 | 66.2256 | 31262 | 14097 | 31269 | 77 | 12 | 15.5844 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | * | 80.2812 | 68.9320 | 96.1039 | 84.6307 | 71 | 32 | 74 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | * | 75.4516 | 68.9320 | 83.3333 | 89.1892 | 71 | 32 | 70 | 14 | 12 | 85.7143 | |
| anovak-vg | INDEL | D16_PLUS | segdup | * | 76.0605 | 68.9655 | 84.7826 | 91.5129 | 40 | 18 | 39 | 7 | 4 | 57.1429 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | het | 80.3709 | 68.9655 | 96.2963 | 85.1648 | 20 | 9 | 26 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | homalt | 81.2379 | 68.9655 | 98.8235 | 97.2835 | 80 | 36 | 84 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | map_l100_m1_e0 | hetalt | 75.4717 | 68.9655 | 83.3333 | 68.8312 | 20 | 9 | 20 | 4 | 4 | 100.0000 | |
| ckim-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 80.0000 | 68.9655 | 95.2381 | 87.2727 | 20 | 9 | 20 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | map_l100_m1_e0 | hetalt | 81.6327 | 68.9655 | 100.0000 | 88.0952 | 20 | 9 | 20 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 69.3125 | 68.9655 | 69.6629 | 88.8471 | 60 | 27 | 62 | 27 | 20 | 74.0741 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.5382 | 68.9655 | 93.9394 | 75.0943 | 60 | 27 | 62 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | I6_15 | HG002complexvar | * | 77.4674 | 68.9900 | 88.3200 | 51.9231 | 3306 | 1486 | 3312 | 438 | 187 | 42.6941 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 36.9440 | 68.9906 | 25.2262 | 52.0434 | 663 | 298 | 669 | 1983 | 1976 | 99.6470 | |
| ckim-gatk | SNP | * | map_l150_m2_e1 | * | 80.8459 | 69.0003 | 97.6016 | 88.7044 | 22225 | 9985 | 22219 | 546 | 44 | 8.0586 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | homalt | 70.6131 | 69.0083 | 72.2944 | 81.5052 | 167 | 75 | 167 | 64 | 59 | 92.1875 | |
| ckim-vqsr | SNP | * | map_l125_m2_e0 | het | 81.2064 | 69.0122 | 98.6348 | 89.1411 | 20233 | 9085 | 20230 | 280 | 4 | 1.4286 | |
| ckim-gatk | SNP | ti | map_l125_m0_e0 | het | 80.6416 | 69.0185 | 96.9723 | 90.3096 | 5703 | 2560 | 5701 | 178 | 22 | 12.3596 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 75.4062 | 69.0323 | 83.0769 | 78.2609 | 107 | 48 | 108 | 22 | 21 | 95.4545 | |
| gduggal-snapplat | INDEL | * | * | * | 76.4210 | 69.0418 | 85.5664 | 67.7420 | 237878 | 106664 | 258555 | 43614 | 6600 | 15.1328 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e1 | * | 80.8313 | 69.0469 | 97.4662 | 88.8350 | 22240 | 9970 | 22234 | 578 | 42 | 7.2664 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e0 | hetalt | 80.5556 | 69.0476 | 96.6667 | 90.4762 | 29 | 13 | 29 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 80.5556 | 69.0476 | 96.6667 | 90.4762 | 29 | 13 | 29 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | hetalt | 76.1978 | 69.0476 | 85.0000 | 95.2719 | 29 | 13 | 17 | 3 | 1 | 33.3333 | |
| qzeng-custom | SNP | tv | map_l100_m2_e0 | hetalt | 81.6901 | 69.0476 | 100.0000 | 89.1791 | 29 | 13 | 29 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m2_e0 | hetalt | 81.6901 | 69.0476 | 100.0000 | 89.1791 | 29 | 13 | 29 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.4521 | 69.0476 | 93.5484 | 96.0710 | 29 | 13 | 29 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | homalt | 80.5851 | 69.0476 | 96.7517 | 89.5717 | 319 | 143 | 417 | 14 | 7 | 50.0000 | |
| qzeng-custom | INDEL | * | map_l250_m2_e0 | het | 76.6664 | 69.0476 | 86.1751 | 98.2597 | 145 | 65 | 187 | 30 | 16 | 53.3333 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.6901 | 69.0476 | 100.0000 | 99.4796 | 29 | 13 | 29 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.4521 | 69.0476 | 93.5484 | 90.6627 | 29 | 13 | 29 | 2 | 1 | 50.0000 | |