PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41251-41300 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 77.0186 | 66.6667 | 91.1765 | 89.5706 | 32 | 16 | 31 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 77.1930 | 66.6667 | 91.6667 | 89.2216 | 34 | 17 | 33 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 72.7273 | 66.6667 | 80.0000 | 95.9514 | 10 | 5 | 8 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 72.7273 | 66.6667 | 80.0000 | 96.0630 | 10 | 5 | 8 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m0_e0 | het | 78.5714 | 66.6667 | 95.6522 | 98.0833 | 22 | 11 | 22 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 95.9596 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 66.6667 | 100.0000 | 96.8750 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.4762 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.5493 | 6 | 3 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 67.6923 | 66.6667 | 68.7500 | 71.4286 | 10 | 5 | 11 | 5 | 3 | 60.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 77.9874 | 66.6667 | 93.9394 | 73.1707 | 30 | 15 | 31 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | segdup | het | 78.0488 | 66.6667 | 94.1176 | 92.7039 | 16 | 8 | 16 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.0149 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | het | 80.0000 | 66.6667 | 100.0000 | 98.7805 | 10 | 5 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | het | 80.0000 | 66.6667 | 100.0000 | 97.6190 | 44 | 22 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | het | 80.0000 | 66.6667 | 100.0000 | 97.6866 | 44 | 22 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.6250 | 2 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.6829 | 2 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.1818 | 2 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 92.4242 | 10 | 5 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 65.6716 | 66.6667 | 64.7059 | 89.5246 | 68 | 34 | 77 | 42 | 4 | 9.5238 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.0000 | 66.6667 | 100.0000 | 95.0820 | 6 | 3 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 94.8052 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1308 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4496 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4791 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| ckim-vqsr | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.5185 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.2857 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.8718 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.3077 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.3077 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.8261 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0583 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.1308 | 2 | 1 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 43.7500 | 8 | 4 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 74.0741 | 66.6667 | 83.3333 | 97.4684 | 4 | 2 | 5 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 76.7677 | 66.6667 | 90.4762 | 88.3978 | 18 | 9 | 19 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | * | 72.7273 | 66.6667 | 80.0000 | 90.1961 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | het | 66.6667 | 66.6667 | 66.6667 | 91.8919 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l125_m0_e0 | het | 80.0000 | 66.6667 | 100.0000 | 95.3846 | 6 | 3 | 6 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.0000 | 66.6667 | 100.0000 | 95.9459 | 6 | 3 | 6 | 0 | 0 | ||