PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40551-40600 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | * | 69.3878 | 65.3846 | 73.9130 | 91.8149 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e1 | * | 69.3878 | 65.3846 | 73.9130 | 91.9861 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.2727 | 65.3846 | 94.4444 | 96.9072 | 17 | 9 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.2727 | 65.3846 | 94.4444 | 96.9072 | 17 | 9 | 17 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 75.1105 | 65.3846 | 88.2353 | 72.5806 | 17 | 9 | 15 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 75.1105 | 65.3846 | 88.2353 | 72.5806 | 17 | 9 | 15 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 79.0698 | 65.3846 | 100.0000 | 66.0000 | 17 | 9 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 79.0698 | 65.3846 | 100.0000 | 67.3077 | 17 | 9 | 17 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | * | 70.8333 | 65.3846 | 77.2727 | 89.0000 | 17 | 9 | 17 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e0 | * | 70.8333 | 65.3846 | 77.2727 | 91.2698 | 17 | 9 | 17 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e1 | * | 70.8333 | 65.3846 | 77.2727 | 91.4062 | 17 | 9 | 17 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 79.0698 | 65.3846 | 100.0000 | 61.5385 | 34 | 18 | 35 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 65.3846 | 0.0000 | 0.0000 | 17 | 9 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 65.3846 | 0.0000 | 0.0000 | 17 | 9 | 0 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.0698 | 65.3846 | 100.0000 | 85.9375 | 17 | 9 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.7426 | 65.3846 | 90.0000 | 93.5691 | 17 | 9 | 18 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 59.9042 | 65.3860 | 55.2704 | 39.0162 | 1787 | 946 | 3015 | 2440 | 1867 | 76.5164 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 78.1296 | 65.4234 | 96.9610 | 81.1140 | 10191 | 5386 | 10178 | 319 | 94 | 29.4671 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 77.9624 | 65.4321 | 96.4286 | 87.1854 | 53 | 28 | 54 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | map_siren | hetalt | 78.5185 | 65.4321 | 98.1481 | 84.8315 | 53 | 28 | 53 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | map_siren | hetalt | 78.5185 | 65.4321 | 98.1481 | 84.8315 | 53 | 28 | 53 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 77.2658 | 65.4354 | 94.3182 | 71.1160 | 248 | 131 | 249 | 15 | 14 | 93.3333 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 78.8405 | 65.4387 | 99.1453 | 42.4354 | 977 | 516 | 928 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | D6_15 | segdup | * | 68.3802 | 65.4450 | 71.5909 | 94.3207 | 125 | 66 | 126 | 50 | 32 | 64.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 45.1709 | 65.4521 | 34.4852 | 53.4012 | 485 | 256 | 489 | 929 | 918 | 98.8159 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.2076 | 65.4545 | 85.6631 | 71.8750 | 252 | 133 | 239 | 40 | 3 | 7.5000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | * | 67.6145 | 65.4545 | 69.9219 | 89.0552 | 180 | 95 | 179 | 77 | 71 | 92.2078 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | hetalt | 75.7129 | 65.4762 | 89.7436 | 93.8583 | 55 | 29 | 35 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | * | map_l125_m2_e0 | het | 68.9335 | 65.4925 | 72.7562 | 91.5977 | 911 | 480 | 916 | 343 | 203 | 59.1837 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 78.9545 | 65.5001 | 99.3652 | 25.9198 | 2639 | 1390 | 2661 | 17 | 17 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | homalt | 79.1667 | 65.5172 | 100.0000 | 90.2564 | 19 | 10 | 19 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 78.2617 | 65.5172 | 97.1616 | 84.3499 | 893 | 470 | 890 | 26 | 7 | 26.9231 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | * | 70.3704 | 65.5172 | 76.0000 | 92.2118 | 38 | 20 | 38 | 12 | 9 | 75.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e1 | het | 72.4170 | 65.5172 | 80.9412 | 93.9878 | 342 | 180 | 344 | 81 | 22 | 27.1605 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 76.0659 | 65.5275 | 90.6435 | 34.5437 | 2416 | 1271 | 2451 | 253 | 251 | 99.2095 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.7206 | 65.5340 | 98.5507 | 56.6038 | 135 | 71 | 136 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 77.5746 | 65.5340 | 95.0355 | 74.5946 | 135 | 71 | 134 | 7 | 5 | 71.4286 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.7206 | 65.5340 | 98.5507 | 56.6038 | 135 | 71 | 136 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 78.6704 | 65.5385 | 98.3834 | 40.9277 | 426 | 224 | 426 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | het | 73.0648 | 65.5393 | 82.5428 | 64.5149 | 30287 | 15925 | 32942 | 6967 | 459 | 6.5882 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 31.8686 | 65.5405 | 21.0526 | 51.2162 | 97 | 51 | 76 | 285 | 285 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 60.0456 | 65.5567 | 55.3892 | 58.1977 | 630 | 331 | 740 | 596 | 423 | 70.9732 | |
| qzeng-custom | SNP | tv | map_l250_m0_e0 | het | 74.5292 | 65.5594 | 86.3426 | 98.2078 | 375 | 197 | 373 | 59 | 42 | 71.1864 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m1_e0 | het | 72.3508 | 65.5602 | 80.7107 | 93.7629 | 316 | 166 | 318 | 76 | 19 | 25.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 72.4320 | 65.5642 | 80.9069 | 93.9773 | 337 | 177 | 339 | 80 | 21 | 26.2500 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.2079 | 65.5738 | 100.0000 | 54.0984 | 40 | 21 | 28 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m1_e0 | * | 75.5265 | 65.5738 | 89.0411 | 97.9332 | 200 | 105 | 260 | 32 | 16 | 50.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 63.3597 | 65.5738 | 61.2903 | 58.1081 | 40 | 21 | 38 | 24 | 24 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 79.1201 | 65.5963 | 99.6683 | 30.7692 | 572 | 300 | 601 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | tv | map_l125_m2_e1 | het | 78.9711 | 65.6022 | 99.1834 | 90.4624 | 6923 | 3630 | 6923 | 57 | 13 | 22.8070 | |