PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40051-40100 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | ti | map_l100_m0_e0 | het | 76.9732 | 62.9193 | 99.1113 | 88.0688 | 8798 | 5185 | 8810 | 79 | 24 | 30.3797 | |
| ckim-vqsr | SNP | * | map_l100_m2_e0 | * | 77.0107 | 62.9198 | 99.2344 | 83.7056 | 46538 | 27426 | 46530 | 359 | 16 | 4.4568 | |
| qzeng-custom | SNP | * | map_l150_m0_e0 | * | 75.4274 | 62.9239 | 94.1324 | 92.2685 | 7571 | 4461 | 7492 | 467 | 396 | 84.7966 | |
| ciseli-custom | INDEL | * | map_l150_m1_e0 | het | 66.7585 | 62.9240 | 71.0907 | 93.2928 | 538 | 317 | 541 | 220 | 129 | 58.6364 | |
| gduggal-snapvard | INDEL | D1_5 | * | hetalt | 0.0000 | 62.9283 | 0.0000 | 0.0000 | 6447 | 3798 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 76.9385 | 62.9306 | 98.9682 | 67.0678 | 2302 | 1356 | 2302 | 24 | 5 | 20.8333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.5258 | 62.9344 | 97.6048 | 68.0077 | 163 | 96 | 163 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_siren | * | 63.0655 | 62.9371 | 63.1944 | 94.7137 | 90 | 53 | 91 | 53 | 38 | 71.6981 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 76.9320 | 62.9626 | 98.8676 | 34.9557 | 6992 | 4113 | 6461 | 74 | 65 | 87.8378 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 32.8502 | 62.9630 | 22.2222 | 78.5714 | 17 | 10 | 2 | 7 | 7 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 68.7222 | 62.9630 | 75.6410 | 66.6667 | 17 | 10 | 59 | 19 | 12 | 63.1579 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.5556 | 62.9630 | 94.4444 | 97.0540 | 17 | 10 | 17 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.2727 | 62.9630 | 100.0000 | 93.6170 | 17 | 10 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 44.2791 | 62.9630 | 34.1463 | 81.0185 | 17 | 10 | 14 | 27 | 16 | 59.2593 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 63.1476 | 62.9630 | 63.3333 | 96.0159 | 17 | 10 | 19 | 11 | 7 | 63.6364 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.5556 | 62.9630 | 94.4444 | 97.7584 | 17 | 10 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.5556 | 62.9630 | 94.4444 | 97.9310 | 17 | 10 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.5556 | 62.9630 | 94.4444 | 97.6471 | 17 | 10 | 17 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 74.9430 | 62.9630 | 92.5532 | 76.6169 | 85 | 50 | 87 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.4508 | 62.9630 | 94.1176 | 80.2326 | 17 | 10 | 16 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | HG002compoundhet | hetalt | 0.0000 | 62.9699 | 0.0000 | 0.0000 | 6433 | 3783 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e1 | * | 76.8627 | 62.9820 | 98.5915 | 90.5369 | 490 | 288 | 490 | 7 | 3 | 42.8571 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.8440 | 62.9842 | 86.3636 | 38.2927 | 439 | 258 | 437 | 69 | 65 | 94.2029 | |
| ciseli-custom | INDEL | * | map_l150_m2_e1 | het | 67.0194 | 62.9870 | 71.6034 | 93.6172 | 582 | 342 | 585 | 232 | 136 | 58.6207 | |
| jmaeng-gatk | SNP | ti | map_l125_m1_e0 | homalt | 77.2828 | 62.9878 | 99.9713 | 72.8260 | 6957 | 4088 | 6957 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 66.3114 | 62.9921 | 70.0000 | 83.0785 | 480 | 282 | 581 | 249 | 22 | 8.8353 | |
| jmaeng-gatk | SNP | * | map_l125_m2_e0 | homalt | 77.2870 | 62.9928 | 99.9726 | 75.5188 | 10945 | 6430 | 10945 | 3 | 3 | 100.0000 | |
| ckim-gatk | SNP | * | map_l125_m2_e1 | homalt | 77.2853 | 63.0048 | 99.9367 | 76.2699 | 11046 | 6486 | 11046 | 7 | 4 | 57.1429 | |
| ckim-gatk | SNP | * | map_l125_m0_e0 | * | 76.5382 | 63.0075 | 97.4697 | 89.2235 | 12214 | 7171 | 12211 | 317 | 31 | 9.7792 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e1 | homalt | 68.2068 | 63.0081 | 74.3405 | 84.7866 | 310 | 182 | 310 | 107 | 94 | 87.8505 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m0_e0 | het | 76.0780 | 63.0208 | 95.9596 | 95.2868 | 121 | 71 | 190 | 8 | 4 | 50.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 59.9388 | 63.0225 | 57.1429 | 46.3295 | 196 | 115 | 376 | 282 | 235 | 83.3333 | |
| ciseli-custom | INDEL | * | map_l125_m0_e0 | het | 66.8718 | 63.0324 | 71.2092 | 93.2956 | 370 | 217 | 371 | 150 | 76 | 50.6667 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 63.2865 | 63.0325 | 63.5426 | 64.6177 | 19796 | 11610 | 19777 | 11347 | 6716 | 59.1875 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 63.2865 | 63.0325 | 63.5426 | 64.6177 | 19796 | 11610 | 19777 | 11347 | 6716 | 59.1875 | |
| eyeh-varpipe | INDEL | I6_15 | * | * | 71.2994 | 63.0343 | 82.0590 | 39.8519 | 15647 | 9176 | 15734 | 3440 | 3408 | 99.0698 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e1 | het | 74.8844 | 63.0388 | 92.2118 | 79.9750 | 1477 | 866 | 1480 | 125 | 73 | 58.4000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.3333 | 63.0435 | 100.0000 | 56.3910 | 58 | 34 | 58 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | het | 74.7073 | 63.0435 | 91.6667 | 81.4433 | 29 | 17 | 33 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 75.3247 | 63.0435 | 93.5484 | 55.0725 | 29 | 17 | 29 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.3333 | 63.0435 | 100.0000 | 58.2734 | 58 | 34 | 58 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l125_m2_e0 | het | 77.2355 | 63.0466 | 99.6657 | 75.2911 | 18484 | 10834 | 18486 | 62 | 10 | 16.1290 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 77.1546 | 63.0485 | 99.3919 | 33.0569 | 8678 | 5086 | 8826 | 54 | 53 | 98.1481 | |
| jmaeng-gatk | SNP | * | map_l125_m0_e0 | * | 76.5092 | 63.0487 | 97.2773 | 89.3850 | 12222 | 7163 | 12219 | 342 | 29 | 8.4795 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | homalt | 77.0609 | 63.0499 | 99.0783 | 80.6250 | 215 | 126 | 215 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m1_e0 | * | 77.0354 | 63.0515 | 98.9899 | 94.0592 | 686 | 402 | 686 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | SNP | ti | map_l100_m2_e1 | homalt | 77.3423 | 63.0691 | 99.9657 | 71.0565 | 11664 | 6830 | 11653 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 58.2603 | 63.0693 | 54.1327 | 69.0970 | 2548 | 1492 | 2790 | 2364 | 1096 | 46.3621 | |
| ckim-isaac | INDEL | * | map_l100_m1_e0 | homalt | 77.1685 | 63.0807 | 99.3582 | 75.2463 | 774 | 453 | 774 | 5 | 3 | 60.0000 | |
| ckim-vqsr | SNP | * | map_l100_m2_e1 | * | 77.1389 | 63.0879 | 99.2421 | 83.6761 | 47150 | 27587 | 47142 | 360 | 16 | 4.4444 | |