PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38751-38800 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 68.8100 | 56.9519 | 86.9048 | 56.7753 | 213 | 161 | 219 | 33 | 31 | 93.9394 | |
| ckim-gatk | SNP | * | map_l150_m2_e0 | homalt | 72.5580 | 56.9536 | 99.9400 | 81.6478 | 6663 | 5036 | 6663 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | * | * | 60.4248 | 56.9575 | 64.3415 | 68.1361 | 3864 | 2920 | 3874 | 2147 | 2111 | 98.3232 | |
| qzeng-custom | SNP | ti | map_l250_m0_e0 | het | 67.5985 | 56.9593 | 83.1250 | 98.4261 | 532 | 402 | 532 | 108 | 85 | 78.7037 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.5897 | 56.9678 | 71.9536 | 70.5077 | 372 | 281 | 372 | 145 | 129 | 88.9655 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 68.1699 | 56.9831 | 84.8219 | 60.1659 | 2089 | 1577 | 3096 | 554 | 345 | 62.2744 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 72.5979 | 56.9832 | 100.0000 | 32.4176 | 102 | 77 | 123 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m0_e0 | homalt | 61.5471 | 56.9943 | 66.8904 | 49.7701 | 2192 | 1654 | 2192 | 1085 | 1011 | 93.1797 | |
| qzeng-custom | SNP | tv | map_l250_m0_e0 | homalt | 71.8954 | 56.9948 | 97.3451 | 95.8148 | 110 | 83 | 110 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 72.3907 | 57.0056 | 99.1501 | 60.4038 | 712 | 537 | 700 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 72.3907 | 57.0056 | 99.1501 | 60.4038 | 712 | 537 | 700 | 6 | 5 | 83.3333 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m1_e0 | het | 71.4516 | 57.0142 | 95.6803 | 75.8729 | 443 | 334 | 443 | 20 | 12 | 60.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | * | 67.0103 | 57.0175 | 81.2500 | 85.1852 | 65 | 49 | 65 | 15 | 15 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m1_e0 | homalt | 72.4954 | 57.0201 | 99.5000 | 79.8184 | 199 | 150 | 199 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 70.4260 | 57.0216 | 92.0694 | 94.2733 | 739 | 557 | 743 | 64 | 15 | 23.4375 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.3699 | 57.0370 | 95.3237 | 59.0574 | 77 | 58 | 265 | 13 | 11 | 84.6154 | |
| ckim-isaac | SNP | * | map_l150_m0_e0 | het | 72.5569 | 57.0403 | 99.6699 | 83.7697 | 4529 | 3411 | 4529 | 15 | 2 | 13.3333 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | * | 72.3894 | 57.0432 | 99.0315 | 95.5984 | 409 | 308 | 409 | 4 | 1 | 25.0000 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | het | 72.2999 | 57.0570 | 98.6561 | 56.4180 | 17472 | 13150 | 17472 | 238 | 9 | 3.7815 | |
| gduggal-snapfb | INDEL | * | map_siren | hetalt | 66.5492 | 57.0850 | 79.7753 | 93.0196 | 141 | 106 | 71 | 18 | 14 | 77.7778 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 72.3381 | 57.0859 | 98.7121 | 81.9630 | 2147 | 1614 | 2146 | 28 | 19 | 67.8571 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 72.3381 | 57.0859 | 98.7121 | 81.9630 | 2147 | 1614 | 2146 | 28 | 19 | 67.8571 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 66.6828 | 57.1125 | 80.1061 | 51.0601 | 538 | 404 | 906 | 225 | 212 | 94.2222 | |
| ckim-gatk | SNP | * | map_l150_m2_e1 | homalt | 72.6891 | 57.1151 | 99.9408 | 81.5997 | 6755 | 5072 | 6755 | 4 | 2 | 50.0000 | |
| ckim-gatk | SNP | ti | map_l100_m0_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 90.0000 | 8 | 6 | 8 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 72.7273 | 57.1429 | 100.0000 | 96.7480 | 4 | 3 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 72.7273 | 57.1429 | 100.0000 | 94.2029 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.3607 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.5507 | 4 | 3 | 4 | 0 | 0 | ||
| ciseli-custom | SNP | ti | map_l100_m0_e0 | hetalt | 69.5652 | 57.1429 | 88.8889 | 73.5294 | 8 | 6 | 8 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.9381 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.1982 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m1_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 94.4444 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 95.2941 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 64.8649 | 57.1429 | 75.0000 | 99.8367 | 4 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 97.0149 | 4 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.0892 | 4 | 3 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.3696 | 4 | 3 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 68.5714 | 57.1429 | 85.7143 | 76.6667 | 76 | 57 | 78 | 13 | 9 | 69.2308 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 70.8861 | 57.1429 | 93.3333 | 87.7049 | 20 | 15 | 14 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | * | map_l100_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 77.3585 | 24 | 18 | 24 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 72.7273 | 57.1429 | 100.0000 | 27.0270 | 28 | 21 | 27 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | segdup | hetalt | 72.7273 | 57.1429 | 100.0000 | 90.1141 | 28 | 21 | 26 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 77.3585 | 24 | 18 | 24 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.3607 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.5507 | 4 | 3 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 62.3549 | 57.1429 | 68.6131 | 99.8675 | 12 | 9 | 94 | 43 | 39 | 90.6977 | |
| eyeh-varpipe | INDEL | * | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 95.1342 | 12 | 9 | 29 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 95.4210 | 12 | 9 | 31 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 96.8641 | 4 | 3 | 9 | 0 | 0 | ||