PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38351-38400 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 54.5455 | 0.0000 | 0.0000 | 6 | 5 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | * | 63.1579 | 54.5455 | 75.0000 | 78.3784 | 6 | 5 | 6 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m0_e0 | * | 65.4545 | 54.5455 | 81.8182 | 90.6780 | 18 | 15 | 18 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 66.6667 | 54.5455 | 85.7143 | 78.1250 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 66.6667 | 54.5455 | 85.7143 | 85.4167 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 66.6667 | 54.5455 | 85.7143 | 86.7925 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 66.6667 | 54.5455 | 85.7143 | 86.7925 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 61.1186 | 54.5495 | 69.4865 | 69.7213 | 8597 | 7163 | 10095 | 4433 | 1247 | 28.1299 | |
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | * | 70.4293 | 54.5590 | 99.3197 | 95.9257 | 730 | 608 | 730 | 5 | 1 | 20.0000 | |
| ckim-gatk | SNP | tv | map_l250_m2_e1 | * | 69.6890 | 54.5610 | 96.4242 | 96.4387 | 1591 | 1325 | 1591 | 59 | 1 | 1.6949 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 68.3908 | 54.5894 | 91.5323 | 59.3443 | 226 | 188 | 227 | 21 | 15 | 71.4286 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 55.7555 | 54.6245 | 56.9343 | 95.0071 | 691 | 574 | 702 | 531 | 51 | 9.6045 | |
| gduggal-bwaplat | SNP | tv | map_l100_m0_e0 | * | 70.5375 | 54.6373 | 99.4907 | 88.8156 | 6056 | 5028 | 6056 | 31 | 10 | 32.2581 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.7366 | 54.6392 | 85.7143 | 3.4483 | 53 | 44 | 24 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_siren | het | 69.0327 | 54.6429 | 93.7107 | 81.3380 | 153 | 127 | 149 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 54.6445 | 0.0000 | 0.0000 | 8424 | 6992 | 0 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m2_e0 | * | 70.6023 | 54.6496 | 99.7079 | 77.9961 | 17407 | 14445 | 17408 | 51 | 12 | 23.5294 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_siren | * | 59.4937 | 54.6512 | 65.2778 | 81.5385 | 47 | 39 | 47 | 25 | 24 | 96.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | homalt | 70.5000 | 54.6512 | 99.2958 | 90.2204 | 141 | 117 | 141 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 65.1949 | 54.6559 | 80.7692 | 61.1940 | 135 | 112 | 189 | 45 | 43 | 95.5556 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 58.9928 | 54.6667 | 64.0625 | 54.2857 | 41 | 34 | 41 | 23 | 22 | 95.6522 | |
| ckim-isaac | SNP | * | map_l150_m2_e1 | * | 70.6272 | 54.6818 | 99.7000 | 78.0346 | 17613 | 14597 | 17614 | 53 | 14 | 26.4151 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 57.0736 | 54.6875 | 59.6774 | 93.7183 | 35 | 29 | 37 | 25 | 4 | 16.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 54.7020 | 0.0000 | 0.0000 | 2542 | 2105 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | * | 65.4035 | 54.7025 | 81.3093 | 79.7697 | 855 | 708 | 857 | 197 | 137 | 69.5431 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m1_e0 | * | 70.7317 | 54.7170 | 100.0000 | 95.6652 | 29 | 24 | 29 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e0 | * | 70.7317 | 54.7170 | 100.0000 | 96.1892 | 29 | 24 | 29 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e1 | * | 70.7317 | 54.7170 | 100.0000 | 96.3057 | 29 | 24 | 29 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 63.8421 | 54.7304 | 76.5939 | 75.6642 | 8799 | 7278 | 8770 | 2680 | 2299 | 85.7836 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 63.8421 | 54.7304 | 76.5939 | 75.6642 | 8799 | 7278 | 8770 | 2680 | 2299 | 85.7836 | |
| ciseli-custom | INDEL | * | map_l250_m1_e0 | het | 57.5615 | 54.7368 | 60.6936 | 97.5902 | 104 | 86 | 105 | 68 | 32 | 47.0588 | |
| ckim-vqsr | SNP | * | map_l125_m2_e0 | * | 70.4819 | 54.7482 | 98.9056 | 88.7400 | 25580 | 21143 | 25577 | 283 | 6 | 2.1201 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 48.7545 | 54.7591 | 43.9366 | 94.6836 | 466 | 385 | 471 | 601 | 36 | 5.9900 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 33.5766 | 54.7619 | 24.2105 | 97.0652 | 23 | 19 | 23 | 72 | 1 | 1.3889 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 65.7143 | 54.7619 | 82.1429 | 95.6923 | 23 | 19 | 23 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m0_e0 | het | 70.5224 | 54.7826 | 98.9529 | 96.3515 | 189 | 156 | 189 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 68.2119 | 54.7872 | 90.3509 | 80.9683 | 103 | 85 | 103 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 55.9441 | 54.7945 | 57.1429 | 94.0171 | 40 | 33 | 40 | 30 | 13 | 43.3333 | |
| ghariani-varprowl | INDEL | I16_PLUS | * | * | 60.9624 | 54.8063 | 68.6764 | 63.4694 | 3495 | 2882 | 3497 | 1595 | 1576 | 98.8088 | |
| ckim-gatk | SNP | tv | map_l150_m1_e0 | homalt | 70.8020 | 54.8150 | 99.9538 | 81.0192 | 2163 | 1783 | 2163 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | map_l125_m0_e0 | * | 70.7547 | 54.8207 | 99.7466 | 75.5092 | 10627 | 8758 | 10627 | 27 | 5 | 18.5185 | |
| anovak-vg | INDEL | D16_PLUS | HG002complexvar | het | 65.7371 | 54.8329 | 82.0546 | 48.1457 | 607 | 500 | 631 | 138 | 95 | 68.8406 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e1 | homalt | 70.6494 | 54.8387 | 99.2701 | 83.9013 | 136 | 112 | 136 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | het | 70.4610 | 54.8457 | 98.5073 | 60.6122 | 8653 | 7124 | 8645 | 131 | 2 | 1.5267 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 70.5909 | 54.8571 | 98.9796 | 54.4186 | 96 | 79 | 97 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | * | * | 54.8287 | 54.8578 | 54.7996 | 53.4671 | 82651 | 68013 | 84844 | 69982 | 59671 | 85.2662 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 59.9212 | 54.8636 | 66.0058 | 31.4666 | 5189 | 4269 | 5194 | 2675 | 2487 | 92.9720 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | homalt | 70.4403 | 54.9020 | 98.2456 | 86.5882 | 112 | 92 | 112 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | het | 70.0000 | 54.9020 | 96.5517 | 96.4976 | 28 | 23 | 28 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 65.6529 | 54.9051 | 81.6327 | 49.3103 | 347 | 285 | 240 | 54 | 29 | 53.7037 | |