PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38301-38350 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 70.4225 | 54.3478 | 100.0000 | 51.0204 | 50 | 42 | 48 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | het | 64.3246 | 54.3478 | 78.7879 | 85.0679 | 25 | 21 | 26 | 7 | 4 | 57.1429 | |
| ckim-vqsr | SNP | ti | map_l125_m1_e0 | * | 70.1902 | 54.3480 | 99.0678 | 87.5048 | 15943 | 13392 | 15941 | 150 | 4 | 2.6667 | |
| ckim-vqsr | SNP | * | map_l100_m0_e0 | * | 70.1414 | 54.3558 | 98.8482 | 87.4638 | 17851 | 14990 | 17850 | 208 | 2 | 0.9615 | |
| ckim-gatk | SNP | ti | map_l250_m1_e0 | * | 69.7981 | 54.3568 | 97.4931 | 96.0316 | 2489 | 2090 | 2489 | 64 | 8 | 12.5000 | |
| ckim-isaac | SNP | tv | map_l125_m1_e0 | * | 70.3696 | 54.3831 | 99.6682 | 71.7978 | 8710 | 7306 | 8712 | 29 | 9 | 31.0345 | |
| ckim-isaac | SNP | ti | map_siren | hetalt | 70.4545 | 54.3860 | 100.0000 | 72.0721 | 31 | 26 | 31 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_siren | hetalt | 69.6629 | 54.3860 | 96.8750 | 86.4407 | 31 | 26 | 31 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l250_m2_e1 | * | 69.5004 | 54.3896 | 96.2379 | 96.4989 | 1586 | 1330 | 1586 | 62 | 2 | 3.2258 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 70.4663 | 54.4000 | 100.0000 | 33.0000 | 68 | 57 | 67 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e1 | homalt | 65.2941 | 54.4118 | 81.6176 | 84.1676 | 111 | 93 | 111 | 25 | 23 | 92.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 60.9623 | 54.4271 | 69.2810 | 72.5314 | 209 | 175 | 212 | 94 | 51 | 54.2553 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 66.1871 | 54.4379 | 84.4037 | 84.9448 | 92 | 77 | 92 | 17 | 17 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 59.1721 | 54.4401 | 64.8052 | 53.7673 | 8736 | 7311 | 8947 | 4859 | 4228 | 87.0138 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 48.9473 | 54.4444 | 44.4584 | 86.7689 | 343 | 287 | 353 | 441 | 11 | 2.4943 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 60.3422 | 54.4854 | 67.6098 | 69.0550 | 12123 | 10127 | 15818 | 7578 | 3735 | 49.2874 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 67.4784 | 54.4914 | 88.5928 | 95.0381 | 825 | 689 | 831 | 107 | 16 | 14.9533 | |
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | homalt | 70.5570 | 54.5082 | 100.0000 | 91.1628 | 399 | 333 | 399 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 68.9830 | 54.5121 | 93.9135 | 78.7818 | 5491 | 4582 | 5493 | 356 | 149 | 41.8539 | |
| gduggal-bwaplat | INDEL | * | tech_badpromoters | homalt | 70.5882 | 54.5455 | 100.0000 | 70.0000 | 18 | 15 | 18 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m1_e0 | het | 66.6667 | 54.5455 | 85.7143 | 94.4444 | 6 | 5 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 63.1579 | 54.5455 | 75.0000 | 88.3212 | 12 | 10 | 12 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 96.4392 | 24 | 20 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 96.7611 | 24 | 20 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m0_e0 | * | 70.5882 | 54.5455 | 100.0000 | 96.2264 | 18 | 15 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m1_e0 | homalt | 70.5882 | 54.5455 | 100.0000 | 91.0448 | 18 | 15 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e0 | homalt | 70.5882 | 54.5455 | 100.0000 | 91.8552 | 18 | 15 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e1 | homalt | 70.5882 | 54.5455 | 100.0000 | 92.0354 | 18 | 15 | 18 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l100_m0_e0 | hetalt | 0.0000 | 54.5455 | 0.0000 | 0.0000 | 18 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | hetalt | 0.0000 | 54.5455 | 0.0000 | 0.0000 | 6 | 5 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | tech_badpromoters | * | 63.6735 | 54.5455 | 76.4706 | 51.4286 | 12 | 10 | 13 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 63.1579 | 54.5455 | 75.0000 | 88.2353 | 6 | 5 | 12 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | * | 52.1739 | 54.5455 | 50.0000 | 52.0000 | 12 | 10 | 12 | 12 | 9 | 75.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.0791 | 54.5455 | 83.7981 | 68.9868 | 528 | 440 | 631 | 122 | 64 | 52.4590 | |
| eyeh-varpipe | INDEL | * | map_l125_m0_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 94.3694 | 6 | 5 | 25 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 69.2308 | 54.5455 | 94.7368 | 83.3333 | 18 | 15 | 36 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e0 | homalt | 70.4000 | 54.5455 | 99.2481 | 84.0144 | 132 | 110 | 132 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e0 | het | 69.8630 | 54.5455 | 97.1429 | 97.2167 | 66 | 55 | 68 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 67.9245 | 54.5455 | 90.0000 | 84.1897 | 36 | 30 | 36 | 4 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | homalt | 70.1299 | 54.5455 | 98.1818 | 84.2632 | 108 | 90 | 108 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 82.1918 | 12 | 10 | 13 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 84.1463 | 12 | 10 | 13 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 70.5882 | 54.5455 | 100.0000 | 84.7059 | 12 | 10 | 13 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | * | 57.1429 | 54.5455 | 60.0000 | 86.1111 | 6 | 5 | 6 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m1_e0 | * | 63.1579 | 54.5455 | 75.0000 | 87.8788 | 6 | 5 | 6 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e0 | * | 63.1579 | 54.5455 | 75.0000 | 90.3614 | 6 | 5 | 6 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e1 | * | 63.1579 | 54.5455 | 75.0000 | 90.4762 | 6 | 5 | 6 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 75.0000 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 78.5714 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 70.5882 | 54.5455 | 100.0000 | 79.3103 | 12 | 10 | 12 | 0 | 0 | ||