PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37851-37900 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | * | map_l100_m0_e0 | homalt | 67.7175 | 51.2048 | 99.9496 | 53.7128 | 5950 | 5670 | 5950 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 60.8696 | 51.2195 | 75.0000 | 96.2617 | 21 | 20 | 21 | 7 | 2 | 28.5714 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 67.7419 | 51.2195 | 100.0000 | 45.5901 | 357 | 340 | 438 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 59.4331 | 51.2295 | 70.7650 | 59.7360 | 250 | 238 | 259 | 107 | 80 | 74.7664 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 56.5143 | 51.2341 | 63.0078 | 48.1760 | 4878 | 4643 | 6033 | 3542 | 2746 | 77.5268 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m1_e0 | het | 67.0857 | 51.2397 | 97.1204 | 79.0685 | 372 | 354 | 371 | 11 | 4 | 36.3636 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 53.8849 | 51.2397 | 56.8182 | 60.5970 | 124 | 118 | 150 | 114 | 77 | 67.5439 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | het | 66.7367 | 51.2690 | 95.5696 | 76.0968 | 303 | 288 | 302 | 14 | 4 | 28.5714 | |
| ckim-isaac | SNP | tv | map_l150_m2_e1 | * | 67.7075 | 51.2780 | 99.6284 | 78.7389 | 5898 | 5604 | 5899 | 22 | 7 | 31.8182 | |
| ciseli-custom | INDEL | * | map_l250_m0_e0 | * | 55.0520 | 51.2821 | 59.4203 | 98.6428 | 40 | 38 | 41 | 28 | 8 | 28.5714 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | het | 51.9481 | 51.2821 | 52.6316 | 95.3827 | 20 | 19 | 20 | 18 | 3 | 16.6667 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 51.2821 | 0.0000 | 0.0000 | 20 | 19 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 57.9710 | 51.2821 | 66.6667 | 62.5000 | 20 | 19 | 4 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 54.3999 | 51.2849 | 57.9178 | 44.7526 | 19438 | 18464 | 33023 | 23994 | 20921 | 87.1926 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 67.5729 | 51.2864 | 99.0164 | 50.3257 | 299 | 284 | 302 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 36.9757 | 51.3011 | 28.9044 | 74.0000 | 138 | 131 | 124 | 305 | 17 | 5.5738 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | homalt | 60.5128 | 51.3043 | 73.7500 | 92.2854 | 59 | 56 | 59 | 21 | 20 | 95.2381 | |
| ndellapenna-hhga | INDEL | D6_15 | HG002complexvar | hetalt | 66.5397 | 51.3327 | 94.5493 | 59.4388 | 520 | 493 | 451 | 26 | 23 | 88.4615 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.4105 | 51.3337 | 98.1491 | 56.8902 | 1963 | 1861 | 1962 | 37 | 36 | 97.2973 | |
| ciseli-custom | INDEL | * | map_l250_m2_e1 | * | 57.7232 | 51.3514 | 65.9004 | 97.5500 | 171 | 162 | 172 | 89 | 44 | 49.4382 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 67.3819 | 51.3536 | 97.9554 | 43.6649 | 607 | 575 | 527 | 11 | 5 | 45.4545 | |
| ciseli-custom | INDEL | * | map_l250_m2_e0 | * | 57.9713 | 51.3595 | 66.5370 | 97.5315 | 170 | 161 | 171 | 86 | 44 | 51.1628 | |
| qzeng-custom | SNP | ti | map_l250_m0_e0 | homalt | 67.7742 | 51.3761 | 99.5475 | 94.9738 | 224 | 212 | 220 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 48.5964 | 51.3854 | 46.0946 | 95.3289 | 408 | 386 | 419 | 490 | 30 | 6.1225 | |
| mlin-fermikit | SNP | ti | map_l150_m2_e0 | homalt | 61.2628 | 51.4049 | 75.7986 | 61.3196 | 3915 | 3701 | 3915 | 1250 | 1181 | 94.4800 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 67.6182 | 51.4052 | 98.7700 | 39.3736 | 878 | 830 | 803 | 10 | 9 | 90.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | * | 63.8147 | 51.4113 | 84.1060 | 79.6633 | 255 | 241 | 254 | 48 | 41 | 85.4167 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 67.6379 | 51.4241 | 98.7842 | 56.3081 | 325 | 307 | 325 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 64.4675 | 51.4286 | 86.3636 | 81.9672 | 18 | 17 | 19 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.7317 | 51.4286 | 95.0000 | 93.4641 | 18 | 17 | 19 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 66.2956 | 51.4563 | 93.1624 | 81.5748 | 106 | 100 | 109 | 8 | 4 | 50.0000 | |
| ckim-isaac | SNP | tv | map_l125_m0_e0 | * | 67.9069 | 51.4704 | 99.7662 | 76.9939 | 3413 | 3218 | 3413 | 8 | 1 | 12.5000 | |
| gduggal-snapvard | INDEL | D6_15 | HG002compoundhet | * | 59.7955 | 51.4782 | 71.3183 | 33.2912 | 4649 | 4382 | 4896 | 1969 | 1719 | 87.3032 | |
| mlin-fermikit | INDEL | * | map_l150_m1_e0 | * | 64.0388 | 51.4948 | 84.6626 | 83.0385 | 689 | 649 | 690 | 125 | 100 | 80.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | hetalt | 66.6667 | 51.5152 | 94.4444 | 86.6667 | 17 | 16 | 17 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 68.0000 | 51.5152 | 100.0000 | 41.2979 | 187 | 176 | 199 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | hetalt | 68.0000 | 51.5152 | 100.0000 | 97.2447 | 17 | 16 | 17 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_siren | hetalt | 64.3533 | 51.5152 | 85.7143 | 76.2712 | 51 | 48 | 12 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 64.0490 | 51.5152 | 84.6429 | 72.1393 | 238 | 224 | 237 | 43 | 41 | 95.3488 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 65.6044 | 51.5250 | 90.2715 | 87.2106 | 794 | 747 | 798 | 86 | 3 | 3.4884 | |
| ckim-vqsr | SNP | tv | map_l250_m1_e0 | het | 67.2754 | 51.5389 | 96.8454 | 97.1535 | 921 | 866 | 921 | 30 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 68.0272 | 51.5464 | 100.0000 | 30.4348 | 50 | 47 | 48 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | * | 58.3125 | 51.5464 | 67.1233 | 96.0879 | 50 | 47 | 49 | 24 | 21 | 87.5000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | * | 53.8462 | 51.5504 | 56.3559 | 88.4200 | 133 | 125 | 133 | 103 | 60 | 58.2524 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 61.8393 | 51.5519 | 77.2561 | 71.5347 | 8288 | 7789 | 8261 | 2432 | 2302 | 94.6546 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 61.8393 | 51.5519 | 77.2561 | 71.5347 | 8288 | 7789 | 8261 | 2432 | 2302 | 94.6546 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.0711 | 51.5528 | 77.9817 | 37.7143 | 83 | 78 | 85 | 24 | 22 | 91.6667 | |
| eyeh-varpipe | INDEL | D1_5 | HG002complexvar | hetalt | 66.7172 | 51.5533 | 94.5191 | 75.2098 | 697 | 655 | 1759 | 102 | 101 | 99.0196 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 65.3856 | 51.5789 | 89.2857 | 85.3018 | 49 | 46 | 50 | 6 | 2 | 33.3333 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 50.2457 | 51.5789 | 48.9796 | 83.9344 | 49 | 46 | 48 | 50 | 49 | 98.0000 | |