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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
37751-37800 / 86044 show all
ckim-vqsrSNP*map_l150_m2_e0*
66.5265
50.1758
98.6845
91.5836
1598215870159792133
1.4085
ckim-isaacSNP*map_l125_m1_e0homalt
66.8137
50.1804
99.9411
61.4585
84838422848355
100.0000
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
55.8292
50.1922
62.8926
42.4297
69196866684940413720
92.0564
gduggal-bwaplatSNPtvmap_l150_m1_e0*
66.7357
50.1924
99.5456
91.4813
547754355477255
20.0000
mlin-fermikitSNP*map_l125_m2_e1*
63.8417
50.2034
87.6540
61.8934
23697235052369233372934
87.9233
mlin-fermikitSNPtimap_l150_m1_e0homalt
60.2226
50.2115
75.2198
56.9340
36793648367912121145
94.4719
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
63.9370
50.2304
87.9310
40.5128
1091081021410
71.4286
mlin-fermikitINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
61.1726
50.2392
78.1885
71.6457
420416423118117
99.1525
gduggal-snapvardINDELD6_15*hetalt
0.0000
50.2569
0.0000
0.0000
41084066000
ckim-isaacSNP*map_l250_m1_e0het
66.7411
50.2629
99.2937
91.8401
239023652390171
5.8824
gduggal-bwaplatINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
64.6064
50.2642
90.4008
85.4064
8568478579111
12.0879
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
64.9523
50.2994
91.6515
76.9456
504498505468
17.3913
ckim-isaacSNPtimap_l250_m2_e0*
66.8081
50.2995
99.4473
90.8038
251924892519143
21.4286
gduggal-snapvardINDELD6_15HG002compoundhethetalt
0.0000
50.3006
0.0000
0.0000
41004051000
mlin-fermikitINDELI16_PLUSHG002compoundhet*
58.0506
50.3033
68.6187
53.6851
107810651078493492
99.7972
ckim-vqsrSNP*map_l150_m2_e1*
66.6447
50.3105
98.6844
91.5888
1620516005162022163
1.3889
ckim-isaacSNPtimap_l250_m2_e1*
66.8585
50.3546
99.4553
90.8557
255625202556143
21.4286
gduggal-snapfbINDELI6_15HG002complexvarhetalt
60.2641
50.3679
75.0000
58.1818
6166072076966
95.6522
ciseli-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
44.1721
50.3828
39.3245
62.5903
329324326503469
93.2406
mlin-fermikitSNPtimap_l125_m2_e1*
64.3036
50.3876
88.8389
61.3583
15403151661540219351705
88.1137
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
54.1762
50.3884
58.5798
35.8416
10378102181115378866105
77.4157
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
54.6126
50.3907
59.6067
38.4218
1612115871225511528211968
78.3144
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
67.0565
50.4399
100.0000
42.0339
17216917100
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
61.4979
50.4415
78.7620
33.7498
348534241169331533094
98.1288
jpowers-varprowlINDELI6_15**
57.4140
50.4492
66.6100
47.5997
12523123001254262876247
99.3638
gduggal-bwaplatINDEL*map_l125_m0_e0*
66.9676
50.4535
99.5526
96.3322
44543744520
0.0000
gduggal-bwaplatSNPtimap_l125_m2_e0homalt
67.0606
50.4578
99.9476
79.7932
57315627572433
100.0000
ckim-vqsrSNPtimap_l150_m2_e0*
66.8194
50.4631
98.8632
91.2397
1035110161103491193
2.5210
gduggal-bwaplatINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
65.7233
50.4831
94.1441
78.8168
209205209138
61.5385
ciseli-customINDELI1_5map_sirenhomalt
62.7683
50.4950
82.9235
77.4631
61260060712597
77.6000
gduggal-bwaplatINDELI1_5map_l125_m0_e0het
67.1280
50.5208
100.0000
96.7944
97959700
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
56.6050
50.5432
64.3189
53.8060
977956968537532
99.0689
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_51to200*
52.7192
50.5474
55.0862
52.4074
10621039991808803
99.3812
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
55.9006
50.5618
62.5000
73.6264
9088905451
94.4444
ckim-vqsrSNPtimap_l150_m2_e1*
66.9029
50.5622
98.8488
91.2579
1047810245104761223
2.4590
ckim-isaacSNP*map_l250_m2_e0het
67.0153
50.5776
99.2819
92.1809
262725672627192
10.5263
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
56.9297
50.5845
65.0951
55.0427
160115641712918650
70.8061
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
60.3225
50.6015
74.6667
66.7122
673657728247230
93.1174
ciseli-customINDEL*map_l150_m0_e0homalt
61.1885
50.6098
77.3585
93.7537
8381822415
62.5000
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
67.0371
50.6098
99.2537
54.5763
16616213310
0.0000
gduggal-bwaplatSNP*map_l125_m0_e0het
67.0117
50.6238
99.0887
93.0436
6411625364155919
32.2034
ckim-isaacSNPtvmap_l150_m1_e0*
67.1487
50.6415
99.6215
77.0250
552653865527217
33.3333
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
44.6735
50.6428
39.9631
53.8471
11031075303045523067
67.3770
anovak-vgINDEL*HG002compoundhethet
52.7411
50.6595
55.0010
54.9014
2074202013874113517959
70.1172
ckim-isaacSNP*map_l250_m2_e1het
67.0943
50.6649
99.2926
92.2258
266725972667192
10.5263
anovak-vgINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
56.0188
50.6667
62.6353
47.3349
532518984587499
85.0085
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
64.5118
50.6716
88.7536
66.8832
9205896191861164976
83.8488
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
64.5118
50.6716
88.7536
66.8832
9205896191861164976
83.8488
gduggal-bwaplatINDELD1_5map_l125_m0_e0homalt
67.2646
50.6757
100.0000
92.9044
75737500
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
67.2854
50.6993
100.0000
38.7234
14514114400