PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37651-37700 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D16_PLUS | tech_badpromoters | het | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 2 | 2 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 44.4444 | 50.0000 | 40.0000 | 97.7169 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 55.1724 | 50.0000 | 61.5385 | 96.2590 | 16 | 16 | 16 | 10 | 3 | 30.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 55.5556 | 50.0000 | 62.5000 | 96.8317 | 10 | 10 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 98.5258 | 3 | 3 | 3 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 74.6032 | 8 | 8 | 8 | 8 | 8 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 25.0000 | 50.0000 | 16.6667 | 68.4211 | 2 | 2 | 2 | 10 | 9 | 90.0000 | |
| ciseli-custom | INDEL | I16_PLUS | tech_badpromoters | homalt | 66.6667 | 50.0000 | 100.0000 | 75.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 94.5946 | 1 | 1 | 0 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 96.9231 | 2 | 2 | 2 | 0 | 0 | ||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 28.5714 | 50.0000 | 20.0000 | 72.2222 | 1 | 1 | 1 | 4 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 33.3333 | 50.0000 | 25.0000 | 73.3333 | 1 | 1 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 22.2222 | 50.0000 | 14.2857 | 93.8596 | 1 | 1 | 1 | 6 | 1 | 16.6667 | |
| ciseli-custom | SNP | * | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 33.3333 | 50.0000 | 25.0000 | 89.1892 | 1 | 1 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 28.5714 | 50.0000 | 20.0000 | 93.5065 | 1 | 1 | 1 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.9011 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.2222 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.7778 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.8261 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 75.0000 | 1 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.8571 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.8095 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0385 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0566 | 1 | 1 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 57.1429 | 50.0000 | 66.6667 | 98.0645 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 57.1429 | 50.0000 | 66.6667 | 98.4615 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.4286 | 1 | 1 | 1 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.7368 | 1 | 1 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 52.6316 | 50.0000 | 55.5556 | 99.5007 | 10 | 10 | 10 | 8 | 4 | 50.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 50.0000 | 33.3333 | 99.4197 | 2 | 2 | 2 | 4 | 2 | 50.0000 | |
| ciseli-custom | INDEL | C6_15 | HG002complexvar | * | 35.4067 | 50.0000 | 27.4074 | 91.9258 | 2 | 2 | 37 | 98 | 37 | 37.7551 | |
| ciseli-custom | INDEL | C6_15 | HG002complexvar | het | 56.6038 | 50.0000 | 65.2174 | 92.6045 | 2 | 2 | 15 | 8 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | decoy | het | 66.6667 | 50.0000 | 100.0000 | 98.0198 | 2 | 2 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | func_cds | homalt | 57.1429 | 50.0000 | 66.6667 | 40.0000 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.4152 | 1 | 1 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.4118 | 1 | 1 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 57.1429 | 50.0000 | 66.6667 | 92.5000 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.7778 | 1 | 1 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.1818 | 1 | 1 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.2456 | 1 | 1 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.4286 | 1 | 1 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0826 | 1 | 1 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 2 | 2 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||