PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37301-37350 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.1651 | 3 | 3 | 3 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.6755 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 92.3077 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.2456 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | func_cds | homalt | 66.6667 | 50.0000 | 100.0000 | 87.5000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 95.6522 | 1 | 1 | 0 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 88.8889 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 87.5000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 94.8052 | 2 | 2 | 2 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | tech_badpromoters | homalt | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 40.0000 | 50.0000 | 33.3333 | 85.0000 | 1 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 41.6667 | 50.0000 | 35.7143 | 97.5567 | 5 | 5 | 5 | 9 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 93.3333 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | func_cds | hetalt | 50.0000 | 50.0000 | 50.0000 | 33.3333 | 2 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 14.2857 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 97.1429 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 97.5000 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 47.6190 | 50.0000 | 45.4545 | 98.2026 | 5 | 5 | 5 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 99.5327 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 71.4286 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | decoy | het | 66.6667 | 50.0000 | 100.0000 | 99.7531 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | homalt | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 4 | 4 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.7447 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.3884 | 8 | 8 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.4959 | 8 | 8 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m0_e0 | * | 66.6667 | 50.0000 | 100.0000 | 98.1651 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.6102 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.9697 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.2381 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.9697 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.5517 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 50.0000 | 100.0000 | 99.1632 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | tech_badpromoters | * | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | tech_badpromoters | het | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 99.5960 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7890 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.5475 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.1453 | 4 | 4 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.8750 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.0000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.8750 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.7805 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.9899 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 66.6667 | 50.0000 | 100.0000 | 65.8537 | 14 | 14 | 14 | 0 | 0 | ||