PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36651-36700 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 61.5923 | 46.3768 | 91.6667 | 79.6610 | 32 | 37 | 33 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | * | 58.1706 | 46.3918 | 77.9661 | 85.9857 | 45 | 52 | 46 | 13 | 12 | 92.3077 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 60.7128 | 46.4157 | 87.7382 | 45.3351 | 4390 | 5068 | 4236 | 592 | 317 | 53.5473 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | homalt | 62.0102 | 46.4286 | 93.3333 | 84.5361 | 13 | 15 | 14 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 63.1996 | 46.4567 | 98.8107 | 36.5459 | 3304 | 3808 | 2908 | 35 | 31 | 88.5714 | |
| ckim-isaac | SNP | tv | map_l125_m2_e0 | homalt | 63.4373 | 46.4683 | 99.9285 | 67.7501 | 2796 | 3221 | 2796 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 50.2630 | 46.4740 | 54.7247 | 37.4043 | 804 | 926 | 805 | 666 | 663 | 99.5495 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 62.1803 | 46.4789 | 93.9024 | 80.7963 | 231 | 266 | 231 | 15 | 9 | 60.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 63.1989 | 46.4849 | 98.6799 | 45.9893 | 324 | 373 | 299 | 4 | 4 | 100.0000 | |
| ckim-isaac | SNP | tv | map_l250_m2_e0 | het | 63.3205 | 46.4948 | 99.2299 | 92.2101 | 902 | 1038 | 902 | 7 | 1 | 14.2857 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 54.9995 | 46.4968 | 67.3077 | 47.2081 | 73 | 84 | 70 | 34 | 26 | 76.4706 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 57.1429 | 46.5116 | 74.0741 | 65.8228 | 20 | 23 | 20 | 7 | 7 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 63.2280 | 46.5116 | 98.7013 | 74.5875 | 80 | 92 | 76 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 61.6323 | 46.5246 | 91.2698 | 88.3076 | 917 | 1054 | 920 | 88 | 9 | 10.2273 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 61.6323 | 46.5246 | 91.2698 | 88.3076 | 917 | 1054 | 920 | 88 | 9 | 10.2273 | |
| ckim-isaac | SNP | tv | map_l125_m2_e1 | homalt | 63.5067 | 46.5426 | 99.9293 | 67.7423 | 2827 | 3247 | 2827 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l250_m1_e0 | homalt | 63.5823 | 46.6086 | 100.0000 | 92.3540 | 749 | 858 | 749 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l250_m1_e0 | homalt | 63.5823 | 46.6086 | 100.0000 | 92.8517 | 749 | 858 | 749 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m0_e0 | homalt | 63.5928 | 46.6199 | 100.0000 | 57.1053 | 1793 | 2053 | 1793 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 53.8900 | 46.6238 | 63.8393 | 72.5153 | 145 | 166 | 143 | 81 | 74 | 91.3580 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | * | 61.2987 | 46.6403 | 89.3939 | 82.1138 | 236 | 270 | 236 | 28 | 25 | 89.2857 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 63.3593 | 46.6406 | 98.7609 | 37.5052 | 3346 | 3828 | 2949 | 37 | 33 | 89.1892 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.8519 | 46.6667 | 58.3333 | 90.9091 | 7 | 8 | 7 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | * | 58.4466 | 46.6667 | 78.1818 | 86.7150 | 42 | 48 | 43 | 12 | 12 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | * | 56.0000 | 46.6667 | 70.0000 | 83.8710 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | * | 56.0000 | 46.6667 | 70.0000 | 86.4865 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | * | 56.0000 | 46.6667 | 70.0000 | 86.6667 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | * | 56.0000 | 46.6667 | 70.0000 | 94.1176 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 60.8696 | 46.6667 | 87.5000 | 96.0784 | 7 | 8 | 7 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m0_e0 | het | 45.5285 | 46.6667 | 44.4444 | 98.7198 | 7 | 8 | 8 | 10 | 3 | 30.0000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | het | 53.8462 | 46.6667 | 63.6364 | 86.1925 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | het | 53.8462 | 46.6667 | 63.6364 | 87.4046 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e1 | het | 53.8462 | 46.6667 | 63.6364 | 87.6866 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | * | 53.8462 | 46.6667 | 63.6364 | 89.7196 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e0 | * | 53.8462 | 46.6667 | 63.6364 | 91.6031 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | * | 53.8462 | 46.6667 | 63.6364 | 91.7293 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 63.6364 | 46.6667 | 100.0000 | 88.2022 | 21 | 24 | 21 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e0 | homalt | 63.6364 | 46.6667 | 100.0000 | 97.3783 | 28 | 32 | 28 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e1 | homalt | 63.6364 | 46.6667 | 100.0000 | 97.4476 | 28 | 32 | 28 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m1_e0 | homalt | 63.6364 | 46.6667 | 100.0000 | 94.1176 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e0 | homalt | 63.6364 | 46.6667 | 100.0000 | 94.8905 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e1 | homalt | 63.6364 | 46.6667 | 100.0000 | 95.1389 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | het | 63.6364 | 46.6667 | 100.0000 | 98.2368 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | het | 63.6364 | 46.6667 | 100.0000 | 98.4581 | 7 | 8 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 53.6328 | 46.6667 | 63.0435 | 33.0909 | 21 | 24 | 116 | 68 | 67 | 98.5294 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 61.9926 | 46.6667 | 92.3077 | 90.4936 | 21 | 24 | 48 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | SNP | ti | map_l150_m1_e0 | hetalt | 63.6364 | 46.6667 | 100.0000 | 92.4731 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l150_m2_e0 | hetalt | 63.6364 | 46.6667 | 100.0000 | 93.7500 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l150_m2_e1 | hetalt | 63.6364 | 46.6667 | 100.0000 | 93.8053 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 37.8106 | 46.6667 | 31.7797 | 37.1505 | 63 | 72 | 300 | 644 | 513 | 79.6584 | |