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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
36201-36250 / 86044 show all
ckim-isaacSNPtvmap_l150_m2_e0homalt
59.9931
42.8606
99.9429
72.5764
17502333175011
100.0000
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
59.2422
42.8650
95.8708
51.4971
23313107234510190
89.1089
mlin-fermikitINDELI1_5map_l150_m2_e1het
59.5186
42.9022
97.1429
85.6704
13618113642
50.0000
mlin-fermikitSNPtvmap_l250_m2_e0homalt
50.5025
42.9029
61.3740
74.4739
402535402253237
93.6759
mlin-fermikitINDELI1_5map_l125_m0_e0*
57.0815
42.9032
85.2564
80.1020
1331771332321
91.3043
gduggal-snapplatINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
47.5340
42.9094
53.2758
84.2729
6684889368556012485
8.0672
mlin-fermikitINDELD1_5map_l250_m2_e0*
56.5892
42.9348
82.9787
91.5996
79105781614
87.5000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
49.8333
42.9384
59.3660
55.4700
8301103824564402
71.2766
gduggal-bwaplatINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
59.0036
42.9403
94.2675
81.9124
2953922961812
66.6667
anovak-vgINDELI1_5HG002compoundhethet
51.6510
42.9412
64.7929
62.2549
365485455324741995
80.6386
ckim-isaacSNPtvmap_l250_m1_e0*
60.0000
42.9543
99.4751
90.6960
11371510113761
16.6667
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
50.1596
42.9630
60.2524
58.3990
587719112619
15.0794
ckim-isaacINDELD6_15map_l125_m2_e1*
59.4595
42.9688
96.4912
90.9236
55735522
100.0000
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
59.9599
42.9829
99.1026
48.8525
830110177376
85.7143
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
59.9599
42.9829
99.1026
48.8525
830110177376
85.7143
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
60.0653
42.9847
99.6711
45.3237
33744730311
100.0000
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
38.8523
42.9872
35.4430
84.3564
2363132524594
0.8715
ckim-gatkSNPtvmap_l250_m1_e0homalt
60.1307
42.9907
100.0000
93.6519
36848836800
ckim-isaacSNPtvmap_l150_m2_e1homalt
60.1387
43.0092
99.9438
72.5081
17782356177811
100.0000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
42.8855
43.0211
42.7507
47.9409
9371241177823811894
79.5464
jpowers-varprowlINDELI16_PLUSmap_siren*
50.3401
43.0233
60.6557
78.9655
3749372424
100.0000
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_triTR_11to50het
52.7157
43.0290
68.0310
66.2410
1574208421941031178
17.2648
egarrison-hhgaINDELD16_PLUS*hetalt
60.0179
43.0419
99.1060
48.8235
832110177676
85.7143
anovak-vgINDELI1_5map_l150_m2_e0het
51.4023
43.0421
63.7931
93.5841
133176148848
9.5238
gduggal-snapvardINDELD6_15map_l100_m2_e0homalt
58.4551
43.0769
90.9091
76.7606
28373033
100.0000
gduggal-snapvardINDELD6_15map_sirenhomalt
57.7796
43.0769
87.7193
72.0588
56745077
100.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
50.4202
43.0804
60.7748
52.4011
7721020753486332
68.3128
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
46.2416
43.0804
49.9034
66.9082
7721020775778771
99.1003
asubramanian-gatkSNP*map_l100_m1_e0*
60.2018
43.0908
99.8527
84.6729
3119941204311934612
26.0870
ckim-isaacSNPtvmap_l250_m2_e0*
60.1307
43.0951
99.4396
91.3095
12421640124271
14.2857
egarrison-hhgaINDELD16_PLUSHG002compoundhethetalt
60.1689
43.1017
99.6134
31.8701
831109777333
100.0000
ciseli-customINDELD16_PLUSmap_l100_m2_e1het
55.8807
43.1373
79.3103
88.0165
22292363
50.0000
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
52.4859
43.1507
66.9753
66.7692
378498434214200
93.4579
gduggal-bwaplatINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
58.6858
43.1579
91.6667
90.6222
2873782862622
84.6154
gduggal-bwafbINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
59.4214
43.1818
95.2381
93.9481
19252011
100.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
51.8908
43.1818
65.0000
89.0710
19251373
42.8571
qzeng-customINDELI1_5map_l250_m1_e0homalt
59.6512
43.1818
96.4286
96.5895
19252710
0.0000
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
53.5743
43.1856
70.5446
64.5614
263346285119105
88.2353
mlin-fermikitSNP*map_l250_m2_e0homalt
52.9680
43.1869
68.4770
75.7965
116015261160534494
92.5094
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
51.7017
43.2260
64.3120
56.8434
175823091748970697
71.8557
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
51.1017
43.2290
62.4805
48.0708
10631396439826411993
75.4638
gduggal-snapvardINDELD6_15map_l125_m2_e1homalt
58.6900
43.2432
91.3043
78.8991
16212122
100.0000
gduggal-bwafbINDELI16_PLUSHG002compoundhet*
58.0785
43.2571
88.3503
33.1438
92712161039137136
99.2701
ckim-isaacSNPtvmap_l250_m2_e1*
60.3106
43.2785
99.4484
91.3314
12621654126271
14.2857
ckim-isaacINDELD6_15map_l100_m2_e1homalt
60.4167
43.2836
100.0000
74.5614
29382900
gduggal-bwafbINDELI16_PLUSHG002complexvarhetalt
57.7977
43.2836
86.9565
69.5364
1451904066
100.0000
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
49.9555
43.2887
59.0497
58.0143
21642835215014911450
97.2502
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
49.9555
43.2887
59.0497
58.0143
21642835215014911450
97.2502
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
58.1841
43.2904
88.7006
71.9789
4716174716058
96.6667
gduggal-bwaplatSNPtimap_l150_m2_e0homalt
60.4067
43.2904
99.9090
85.1344
32974319329333
100.0000