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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 719 720 721 722 723 724 725 726 727 ... 1720 1721 » 36101-36150 / 86044 show all
mlin-fermikit	SNP	ti	map_l150_m1_e0	*	56.8574	42.3346	86.5470	60.8408	8345	11367	8344	1297	1150	88.6662
mlin-fermikit	SNP	*	map_l150_m1_e0	*	56.5558	42.3405	85.1406	61.3631	12960	17649	12955	2261	1991	88.0584
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	46.9955	42.3432	52.7964	40.4686	8721	11875	8666	7748	7585	97.8962
gduggal-snapplat	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	53.7099	42.3437	73.4172	63.2026	2851	3882	3850	1394	367	26.3271
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	45.9086	42.3685	50.0943	72.1654	2118	2881	2125	2117	2097	99.0553
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	45.9086	42.3685	50.0943	72.1654	2118	2881	2125	2117	2097	99.0553
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	46.1868	42.3753	50.7516	72.8442	6194	8423	7833	7601	1738	22.8654
ckim-vqsr	SNP	*	map_l250_m2_e0	*	59.1976	42.3843	98.1210	97.1166	3342	4543	3342	64	0	0.0000
ciseli-custom	INDEL	D16_PLUS	HG002complexvar	*	48.6337	42.4224	56.9758	58.5526	697	946	682	515	432	83.8835
eyeh-varpipe	INDEL	*	map_l100_m0_e0	hetalt	58.2726	42.4242	93.0233	93.1746	14	19	40	3	2	66.6667
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	0.0000	42.4242	0.0000	0.0000	14	19	0	0	0
ciseli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	38.3260	42.4390	34.9398	82.2902	87	118	87	162	148	91.3580
ciseli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	38.3260	42.4390	34.9398	82.2902	87	118	87	162	148	91.3580
mlin-fermikit	INDEL	D6_15	map_l100_m2_e1	hetalt	59.0289	42.4658	96.7742	72.0721	31	42	30	1	0	0.0000
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	51.5950	42.4685	65.7179	59.2998	2123	2876	2101	1096	789	71.9891
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	51.5950	42.4685	65.7179	59.2998	2123	2876	2101	1096	789	71.9891
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	59.5731	42.4788	99.6904	42.1147	401	543	322	1	1	100.0000
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	59.6413	42.4920	100.0000	90.0000	532	720	1	0	0
egarrison-hhga	INDEL	D16_PLUS	HG002complexvar	hetalt	59.4347	42.5101	98.7500	56.1644	105	142	158	2	2	100.0000
mlin-fermikit	INDEL	D6_15	map_l125_m0_e0	*	51.0018	42.5532	63.6364	88.1295	20	27	21	12	7	58.3333
gduggal-bwafb	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	57.2597	42.5532	87.5000	68.4211	20	27	21	3	3	100.0000
gduggal-bwaplat	INDEL	D6_15	map_l125_m0_e0	*	59.7015	42.5532	100.0000	98.0806	20	27	20	0	0
gduggal-bwaplat	SNP	ti	map_l250_m2_e0	het	59.6085	42.5630	99.4265	97.5359	1385	1869	1387	8	2	25.0000
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	59.5561	42.5651	99.1245	51.1308	1603	2163	1585	14	12	85.7143
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	59.5561	42.5651	99.1245	51.1308	1603	2163	1585	14	12	85.7143
ckim-vqsr	SNP	*	map_l250_m2_e1	*	59.3854	42.5817	98.0963	97.1254	3401	4586	3401	66	0	0.0000
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	43.7892	42.5926	45.0549	82.5000	46	62	41	50	25	50.0000
mlin-fermikit	INDEL	*	map_l150_m0_e0	*	55.2333	42.6070	78.4946	86.0290	219	295	219	60	41	68.3333
ckim-vqsr	SNP	*	map_l100_m2_e0	homalt	59.7529	42.6116	99.9659	78.6625	11728	15795	11728	4	3	75.0000
ckim-isaac	INDEL	I6_15	map_l100_m2_e0	het	59.0641	42.6230	96.1538	92.8177	26	35	25	1	1	100.0000
ckim-isaac	INDEL	I6_15	map_l100_m2_e1	het	59.0641	42.6230	96.1538	92.8767	26	35	25	1	1	100.0000
gduggal-bwaplat	INDEL	D1_5	map_l250_m2_e1	het	59.7701	42.6230	100.0000	98.9735	52	70	52	0	0
gduggal-bwaplat	SNP	*	map_l150_m2_e0	homalt	59.7639	42.6276	99.9398	85.5833	4987	6712	4983	3	3	100.0000
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	48.9297	42.6581	57.3634	45.6299	6307	8478	6466	4806	3764	78.3188
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	57.2983	42.6638	87.2144	64.2116	4728	6354	4543	666	344	51.6517
ckim-vqsr	SNP	ti	map_l250_m2_e0	*	59.5430	42.6717	98.4793	97.0358	2137	2871	2137	33	0	0.0000
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	47.8252	42.6757	54.3879	44.5978	504	677	502	421	421	100.0000
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	51.2406	42.6785	64.1003	68.1692	16176	21726	19332	10827	4241	39.1706
gduggal-bwaplat	SNP	ti	map_l250_m2_e1	het	59.7244	42.6796	99.4358	97.5469	1408	1891	1410	8	2	25.0000
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	59.7005	42.6942	99.2246	54.0503	4903	6581	4863	38	33	86.8421
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	53.0409	42.6966	70.0000	56.1753	76	102	77	33	31	93.9394
mlin-fermikit	INDEL	D1_5	map_l250_m2_e1	*	56.3873	42.7027	82.9787	91.9105	79	106	78	16	14	87.5000
mlin-fermikit	INDEL	I1_5	map_l150_m2_e0	het	59.3258	42.7184	97.0588	85.5779	132	177	132	4	2	50.0000
mlin-fermikit	SNP	ti	map_l150_m0_e0	homalt	53.2251	42.7381	70.5320	59.3142	1180	1581	1180	493	459	93.1034
jmaeng-gatk	SNP	tv	map_l250_m1_e0	homalt	59.8528	42.7570	99.7275	93.2050	366	490	366	1	1	100.0000
anovak-vg	INDEL	I1_5	map_l150_m1_e0	het	51.0679	42.8094	63.2743	93.1411	128	171	143	83	7	8.4337
eyeh-varpipe	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	59.5793	42.8121	97.9353	47.2358	1629	2176	3178	67	62	92.5373
ckim-vqsr	SNP	*	map_l100_m2_e1	homalt	59.9673	42.8299	99.9664	78.5551	11905	15891	11905	4	3	75.0000
ckim-vqsr	SNP	ti	map_l250_m2_e1	*	59.7117	42.8487	98.4608	97.0448	2175	2901	2175	34	0	0.0000
ckim-isaac	INDEL	D6_15	map_l150_m2_e0	homalt	60.0000	42.8571	100.0000	79.3103	12	16	12	0	0

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