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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 718 719 720 721 722 723 724 725 726 ... 1720 1721 » 36051-36100 / 86044 show all
ckim-vqsr	SNP	tv	map_l250_m2_e0	*	58.5236	41.8112	97.4919	97.2532	1205	1677	1205	31	0	0.0000
gduggal-bwaplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	57.0248	41.8182	89.6104	97.1545	69	96	69	8	2	25.0000
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	44.4518	41.8244	47.4313	70.0067	1701	2366	1708	1893	1866	98.5737
gduggal-snapfb	INDEL	I6_15	HG002compoundhet	het	56.6000	41.8269	87.5070	19.0965	87	121	4686	669	652	97.4589
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	50.2628	41.8345	62.9440	73.1508	18129	25206	21603	12718	4309	33.8811
ckim-vqsr	SNP	*	map_l100_m1_e0	homalt	59.0007	41.8509	99.9646	77.1745	11301	15702	11301	4	3	75.0000
mlin-fermikit	SNP	*	map_l100_m2_e1	hetalt	59.0164	41.8605	100.0000	70.9677	18	25	18	0	0
mlin-fermikit	SNP	tv	map_l100_m2_e1	hetalt	59.0164	41.8605	100.0000	70.9677	18	25	18	0	0
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	56.5401	41.8750	87.0130	90.2900	67	93	67	10	3	30.0000
gduggal-bwaplat	SNP	ti	map_l150_m1_e0	homalt	59.0384	41.8998	99.9022	84.1026	3070	4257	3066	3	3	100.0000
anovak-vg	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	51.7848	41.9187	67.7249	51.1628	402	557	384	183	140	76.5027
mlin-fermikit	SNP	ti	map_l100_m2_e1	hetalt	59.0909	41.9355	100.0000	71.1111	13	18	13	0	0
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	47.0909	41.9643	53.6443	57.0892	517	715	552	477	405	84.9057
gduggal-snapvard	INDEL	I1_5	HG002complexvar	hetalt	0.0000	41.9710	0.0000	0.0000	724	1001	0	0	0
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	57.2505	41.9890	89.9408	89.1458	152	210	152	17	17	100.0000
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	45.8395	42.0033	50.4468	47.0151	8651	11945	8637	8484	8329	98.1730
gduggal-snapplat	INDEL	I1_5	HG002complexvar	hetalt	55.6197	42.0046	82.2940	85.5161	725	1001	739	159	112	70.4403
gduggal-bwaplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	57.4827	42.0290	90.9091	96.2199	29	40	30	3	3	100.0000
ckim-vqsr	SNP	tv	map_l250_m2_e1	*	58.7446	42.0439	97.4563	97.2616	1226	1690	1226	32	0	0.0000
ckim-isaac	SNP	*	map_l250_m2_e0	homalt	59.1933	42.0700	99.8233	85.8571	1130	1556	1130	2	2	100.0000
gduggal-snapvard	INDEL	*	HG002compoundhet	*	47.5012	42.0784	54.5285	56.5286	12605	17351	24630	20539	16069	78.2365
gduggal-snapvard	INDEL	I1_5	map_l125_m2_e0	hetalt	0.0000	42.1053	0.0000	0.0000	8	11	0	0	0
gduggal-snapvard	INDEL	I1_5	map_l125_m2_e1	hetalt	0.0000	42.1053	0.0000	0.0000	8	11	0	0	0
gduggal-bwaplat	INDEL	D16_PLUS	map_l100_m0_e0	het	59.2593	42.1053	100.0000	98.1043	8	11	8	0	0
ndellapenna-hhga	INDEL	D16_PLUS	HG002complexvar	hetalt	58.9170	42.1053	98.0769	57.6087	104	143	153	3	2	66.6667
ghariani-varprowl	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	43.5285	42.1324	45.0202	75.7921	4244	5829	4231	5167	5021	97.1744
mlin-fermikit	INDEL	I1_5	map_l150_m1_e0	het	58.8785	42.1405	97.6744	82.3529	126	173	126	3	2	66.6667
gduggal-bwaplat	INDEL	D1_5	map_l250_m2_e0	het	59.3023	42.1488	100.0000	98.9699	51	70	51	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	44.1015	42.1796	46.2069	48.7496	2241	3072	3551	4134	3627	87.7358
gduggal-snapvard	INDEL	D6_15	map_l100_m1_e0	homalt	57.6307	42.1875	90.9091	76.0870	27	37	30	3	3	100.0000
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	58.9695	42.1941	97.8873	36.0360	100	137	278	6	6	100.0000
ckim-isaac	SNP	*	map_l250_m2_e1	homalt	59.3225	42.2001	99.8259	85.8515	1147	1571	1147	2	2	100.0000
gduggal-snapplat	INDEL	I1_5	HG002compoundhet	*	48.1810	42.2143	56.1120	77.8637	5216	7140	5412	4233	851	20.1039
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	58.4615	42.2222	95.0000	72.9730	19	26	19	1	1	100.0000
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	58.4615	42.2222	95.0000	72.9730	19	26	19	1	1	100.0000
ghariani-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	51.3936	42.2407	65.6103	66.2441	558	763	559	293	288	98.2935
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	54.9072	42.2449	78.4091	85.8369	207	283	207	57	28	49.1228
jpowers-varprowl	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	56.6114	42.2485	85.7701	63.4733	1537	2101	1537	255	235	92.1569
mlin-fermikit	SNP	ti	map_l250_m1_e0	homalt	53.4856	42.2526	72.8541	73.1257	679	928	679	253	229	90.5138
gduggal-snapplat	INDEL	D1_5	*	hetalt	56.5026	42.2548	85.2469	84.6995	4329	5916	4403	762	572	75.0656
anovak-vg	INDEL	I1_5	map_l150_m2_e1	het	50.9949	42.2713	64.2553	93.6383	134	183	151	84	8	9.5238
ghariani-varprowl	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	56.5337	42.2760	85.3023	63.5610	1538	2100	1538	265	235	88.6792
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	56.9333	42.2920	87.0801	78.6542	310	423	337	50	17	34.0000
gduggal-snapplat	INDEL	D1_5	HG002compoundhet	hetalt	57.5062	42.2964	89.7972	79.0515	4321	5895	4383	498	424	85.1406
ckim-isaac	INDEL	D6_15	map_l150_m1_e0	homalt	59.4595	42.3077	100.0000	77.5510	11	15	11	0	0
mlin-fermikit	INDEL	D16_PLUS	map_l100_m1_e0	hetalt	57.7428	42.3077	90.9091	78.4314	11	15	10	1	0	0.0000
mlin-fermikit	INDEL	D16_PLUS	map_l100_m2_e0	hetalt	57.8947	42.3077	91.6667	78.1818	11	15	11	1	0	0.0000
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	56.5351	42.3182	85.1372	53.5880	1705	2324	1707	298	259	86.9128
ckim-isaac	SNP	tv	map_l150_m1_e0	homalt	59.4623	42.3213	99.9402	68.6492	1670	2276	1670	1	1	100.0000
mlin-fermikit	SNP	tv	map_l150_m1_e0	*	56.0020	42.3295	82.7209	62.1223	4619	6293	4615	964	841	87.2407

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