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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 714 715 716 717 718 719 720 721 722 ... 1720 1721 » 35851-35900 / 86044 show all
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	50.3311	40.0000	67.8571	62.1622	14	21	38	18	17	94.4444
gduggal-bwafb	INDEL	*	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	40.0000	40.0000	40.0000	99.5802	2	3	2	3	2	66.6667
gduggal-bwaplat	INDEL	*	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	50.0000	40.0000	66.6667	99.7432	2	3	2	1	1	100.0000
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	55.5556	40.0000	90.9091	92.7869	20	30	20	2	1	50.0000
asubramanian-gatk	SNP	tv	map_l100_m1_e0	*	57.1254	40.0024	99.8777	86.7426	9801	14700	9799	12	2	16.6667
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	56.5642	40.0198	96.4286	46.2791	2430	3642	2673	99	84	84.8485
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	43.1783	40.0414	46.8485	64.6530	774	1159	773	877	864	98.5177
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	0.0000	40.0433	0.0000	0.0000	185	277	0	0	0
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	46.8191	40.0480	56.3456	64.3182	2002	2997	1989	1541	1431	92.8618
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	46.8191	40.0480	56.3456	64.3182	2002	2997	1989	1541	1431	92.8618
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	56.8714	40.0911	97.8102	43.3884	176	263	134	3	2	66.6667
gduggal-bwaplat	SNP	tv	map_l150_m1_e0	homalt	57.2617	40.1166	100.0000	85.3494	1583	2363	1583	0	0
gduggal-bwaplat	SNP	*	map_l150_m0_e0	*	57.1530	40.1263	99.2803	94.5754	4828	7204	4828	35	15	42.8571
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	56.5909	40.1432	95.8723	58.5392	4205	6270	6759	291	284	97.5945
ciseli-custom	INDEL	I1_5	map_l100_m1_e0	homalt	54.1379	40.1544	83.0645	82.5475	208	310	206	42	33	78.5714
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	54.8241	40.1571	86.3699	66.0570	3731	5560	3783	597	508	85.0921
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	54.8241	40.1571	86.3699	66.0570	3731	5560	3783	597	508	85.0921
eyeh-varpipe	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	56.5705	40.1699	95.6035	76.3129	6193	9224	10155	467	451	96.5739
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	51.3203	40.1741	71.0262	37.0164	969	1443	4741	1934	1923	99.4312
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	57.3175	40.2014	99.8145	34.3484	519	772	538	1	1	100.0000
gduggal-bwafb	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	52.0278	40.2098	73.6842	72.8571	115	171	14	5	5	100.0000
mlin-fermikit	SNP	*	map_l250_m0_e0	homalt	49.5108	40.2226	64.3766	80.0000	253	376	253	140	131	93.5714
anovak-vg	INDEL	I1_5	map_l125_m2_e0	het	49.5663	40.2414	64.5161	91.8362	200	297	220	121	15	12.3967
gduggal-bwaplat	INDEL	*	map_l150_m0_e0	homalt	57.3913	40.2439	100.0000	96.0667	66	98	66	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	0.0000	40.2597	0.0000	0.0000	713	1058	0	0	0
egarrison-hhga	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	57.3427	40.2628	99.5902	49.2196	521	773	486	2	2	100.0000
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	57.1429	40.2685	98.3607	88.5338	60	89	60	1	0	0.0000
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	49.1489	40.2731	63.0429	36.1826	2389	3543	4848	2842	2348	82.6179
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	55.9562	40.2810	91.6031	29.1892	688	1020	240	22	21	95.4545
gduggal-bwaplat	SNP	ti	map_l250_m1_e0	het	57.3348	40.2965	99.3367	97.5609	1196	1772	1198	8	2	25.0000
anovak-vg	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	50.6371	40.3001	68.1066	40.7912	2310	3422	6748	3160	2890	91.4557
ciseli-custom	INDEL	I1_5	map_l100_m2_e0	homalt	54.2174	40.3013	82.8125	83.8994	214	317	212	44	35	79.5455
ckim-vqsr	SNP	tv	map_l250_m1_e0	*	57.0360	40.3476	97.2678	97.1909	1068	1579	1068	30	0	0.0000
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	54.1272	40.3636	82.1340	57.9332	333	492	331	72	71	98.6111
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	54.1272	40.3636	82.1340	57.9332	333	492	331	72	71	98.6111
ckim-isaac	INDEL	*	map_l250_m1_e0	homalt	57.5163	40.3670	100.0000	93.4621	44	65	44	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	56.0345	40.3727	91.5493	70.2929	65	96	65	6	6	100.0000
gduggal-snapfb	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	55.0460	40.3746	86.4662	35.5308	388	573	1150	180	175	97.2222
gduggal-snapplat	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	52.9926	40.3952	77.0079	55.5166	1104	1629	978	292	97	33.2192
jpowers-varprowl	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	44.0104	40.4063	48.3203	59.8954	6484	9563	6487	6938	6879	99.1496
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	55.8190	40.4348	90.0990	79.0021	93	137	91	10	9	90.0000
mlin-fermikit	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	57.4807	40.4480	99.2929	38.4711	957	1409	983	7	6	85.7143
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	46.1659	40.4511	53.7611	64.5212	269	396	243	209	202	96.6507
mlin-fermikit	SNP	*	map_l100_m0_e0	het	57.3538	40.4669	98.4278	57.0061	8581	12624	8577	137	4	2.9197
mlin-fermikit	SNP	*	map_l100_m2_e0	hetalt	57.6271	40.4762	100.0000	71.6667	17	25	17	0	0
mlin-fermikit	SNP	tv	map_l100_m2_e0	hetalt	57.6271	40.4762	100.0000	71.6667	17	25	17	0	0
mlin-fermikit	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	57.4257	40.5021	98.6434	49.1124	484	711	509	7	6	85.7143
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	57.5970	40.5152	99.5822	36.4039	692	1016	715	3	3	100.0000
gduggal-bwaplat	SNP	*	map_l250_m2_e0	het	57.5846	40.5275	99.4337	97.7208	2105	3089	2107	12	3	25.0000
gduggal-snapplat	INDEL	D1_5	HG002complexvar	hetalt	53.4943	40.5325	78.6432	87.0210	548	804	626	170	133	78.2353

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