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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
35701-35750 / 86044 show all
ckim-isaacINDELI16_PLUSHG002complexvar*
52.2963
39.2666
78.2675
62.9505
51479551514346
32.1678
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
56.2018
39.2727
98.7842
59.4828
32450132544
100.0000
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
56.2018
39.2727
98.7842
59.4828
32450132544
100.0000
gduggal-bwafbINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
54.2254
39.2857
87.5000
57.8947
1117711
100.0000
anovak-vgINDELD16_PLUSmap_l100_m0_e0*
52.3810
39.2857
78.5714
92.5532
11171133
100.0000
gduggal-snapplatINDELD6_15map_l150_m2_e0homalt
56.4103
39.2857
100.0000
94.2149
1117700
mlin-fermikitSNPtimap_l150_m2_e1het
56.1207
39.2931
98.1570
69.2394
511479015113965
5.2083
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
49.2182
39.3273
65.7559
77.6192
30446936118852
27.6596
anovak-vgINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
35.0904
39.3443
31.6667
53.3679
48745712384
68.2927
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
49.7306
39.3443
67.5676
84.2553
2437251211
91.6667
gduggal-bwaplatINDEL*map_l250_m1_e0*
56.4706
39.3443
100.0000
98.8721
12018512000
gduggal-snapfbINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
54.9992
39.3519
91.3043
52.3316
851318488
100.0000
ciseli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
39.9506
39.3669
40.5518
64.0084
485747485711356
50.0703
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
49.2494
39.3734
65.7385
28.0488
465716543283280
98.9399
gduggal-bwaplatINDELD1_5map_l250_m0_e0het
56.5217
39.3939
100.0000
99.4522
13201300
gduggal-snapplatINDEL*tech_badpromotershomalt
53.0612
39.3939
81.2500
71.9298
13201330
0.0000
gduggal-snapvardINDEL*tech_badpromotershomalt
56.5217
39.3939
100.0000
51.7241
13201400
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
48.4670
39.4052
62.9412
75.7489
1061631076360
95.2381
ciseli-customINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
40.2067
39.4727
40.9685
65.1113
10481607106615361023
66.6016
ciseli-customINDELI1_5map_l250_m2_e1*
46.1538
39.4737
55.5556
97.4782
4569453627
75.0000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
43.8569
39.4929
49.3052
41.4961
721111048720374067360
99.3789
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
51.4864
39.5122
73.8739
83.1563
81124822928
96.5517
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
51.4864
39.5122
73.8739
83.1563
81124822928
96.5517
gduggal-bwafbINDELI16_PLUS*het
55.7818
39.5143
94.8163
37.5746
107416441884103103
100.0000
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
54.7486
39.5161
89.0909
97.3583
49754961
16.6667
gduggal-bwavardINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
49.7630
39.5223
67.1670
73.6334
7281114716350286
81.7143
ciseli-customINDELI6_15func_cds*
53.1250
39.5349
80.9524
32.2581
17261744
100.0000
gduggal-bwafbINDELI16_PLUSHG002complexvarhet
56.0161
39.5489
95.9799
46.2162
2634023821616
100.0000
anovak-vgINDELI1_5map_l125_m0_e0het
48.1438
39.5833
61.4286
93.9707
7611686547
12.9630
gduggal-snapvardINDELI1_5segduphetalt
0.0000
39.5833
0.0000
0.0000
1929000
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
42.7044
39.5869
46.3548
67.9809
16102457161518691855
99.2509
anovak-vgINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
50.7904
39.6185
70.7374
39.8375
540823513221231902
89.5902
ckim-isaacINDELI6_15map_l100_m2_e0*
56.4417
39.6552
97.8723
91.1488
46704611
100.0000
ckim-isaacINDELI6_15map_l100_m2_e1*
56.4417
39.6552
97.8723
91.2639
46704611
100.0000
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
37.9373
39.6694
36.3501
63.2242
38458497617091112
65.0673
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
56.8282
39.6923
100.0000
35.3808
25839226300
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
49.9912
39.7086
67.4603
80.7634
21833125512324
19.5122
mlin-fermikitSNPtvmap_l100_m0_e0het
56.5874
39.7258
98.3185
59.7124
286943532865490
0.0000
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
45.9396
39.7316
54.4469
43.4180
54778308562647073701
78.6276
mlin-fermikitINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
56.8303
39.7366
99.7333
37.6559
724109874822
100.0000
anovak-vgINDELI1_5map_l125_m2_e1het
49.1777
39.7638
64.4315
91.9559
20230622112215
12.2951
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
47.6809
39.8148
59.4203
84.0278
4365412828
100.0000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
42.9887
39.8223
46.7021
60.4305
703710634703180247936
98.9033
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
42.9887
39.8223
46.7021
60.4305
703710634703180247936
98.9033
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
53.3937
39.8649
80.8219
88.1107
598959147
50.0000
mlin-fermikitINDEL*map_l250_m2_e0*
53.6585
39.8792
81.9876
92.9540
1321991322921
72.4138
ckim-isaacSNPtvmap_l250_m0_e0homalt
57.0370
39.8964
100.0000
90.1911
771167700
mlin-fermikitSNPtimap_l250_m0_e0homalt
50.6550
39.9083
69.3227
79.0659
1742621747771
92.2078
gduggal-snapplatINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
56.3564
39.9149
95.8304
60.8880
271940932735119102
85.7143
anovak-vgINDELI1_5map_l125_m1_e0het
49.2776
39.9177
64.3713
91.2405
19429221511914
11.7647