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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 708 709 710 711 712 713 714 715 716 ... 1720 1721 » 35551-35600 / 86044 show all
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	54.1881	37.8431	95.3871	85.0345	579	951	579	28	21	75.0000
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	48.9376	37.8496	69.2135	34.1472	1475	2422	4928	2192	2178	99.3613
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	54.5918	37.8497	97.8929	39.6624	2584	4243	2834	61	58	95.0820
gduggal-bwaplat	SNP	*	map_l125_m0_e0	homalt	54.9108	37.8576	99.9213	85.2772	2541	4171	2539	2	2	100.0000
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	51.3343	37.8608	79.6954	89.2663	446	732	471	120	38	31.6667
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	54.8776	37.8708	99.6098	30.9469	1800	2953	1787	7	7	100.0000
anovak-vg	INDEL	I1_5	map_l100_m2_e1	het	47.7657	37.9012	64.5714	90.0794	307	503	339	186	31	16.6667
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	53.6664	37.9233	91.7582	47.7011	168	275	167	15	13	86.6667
gduggal-snapplat	INDEL	D6_15	map_l150_m2_e1	homalt	55.0000	37.9310	100.0000	94.3089	11	18	7	0	0
mlin-fermikit	SNP	ti	map_l100_m1_e0	hetalt	55.0000	37.9310	100.0000	70.2703	11	18	11	0	0
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	het	52.8000	37.9310	86.8421	99.9569	33	54	33	5	5	100.0000
anovak-vg	INDEL	D16_PLUS	map_l100_m1_e0	*	52.2205	37.9310	83.7838	88.2166	33	54	31	6	5	83.3333
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	52.3943	37.9325	84.6777	63.9143	5229	8556	5018	908	475	52.3128
jpowers-varprowl	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	48.9503	37.9479	68.9379	70.3682	699	1143	688	310	289	93.2258
mlin-fermikit	SNP	*	map_l125_m0_e0	*	52.1003	37.9727	82.9686	58.9613	7361	12024	7356	1510	1338	88.6093
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	48.7099	38.0000	67.8261	54.3651	19	31	78	37	9	24.3243
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	40.7441	38.0238	43.8836	68.6231	735	1198	739	945	935	98.9418
gduggal-snapplat	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	48.7196	38.0282	67.7741	83.0040	405	660	408	194	18	9.2784
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	54.0000	38.0282	93.1034	47.2727	27	44	27	2	2	100.0000
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	53.6602	38.0295	91.1060	74.8783	799	1302	799	78	48	61.5385
gduggal-snapvard	INDEL	*	HG002complexvar	hetalt	0.0000	38.0476	0.0000	0.0000	1407	2291	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	50.5393	38.0488	75.2381	84.0909	78	127	79	26	25	96.1538
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	50.5393	38.0488	75.2381	84.0909	78	127	79	26	25	96.1538
gduggal-snapplat	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	52.7266	38.0507	85.8309	70.4516	6106	9941	5785	955	426	44.6073
gduggal-bwaplat	INDEL	I1_5	map_l250_m2_e0	*	55.1282	38.0531	100.0000	99.0247	43	70	43	0	0
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	44.0360	38.0774	52.2053	83.4017	11606	18874	14180	12982	2052	15.8065
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	44.0360	38.0774	52.2053	83.4017	11606	18874	14180	12982	2052	15.8065
gduggal-bwaplat	SNP	tv	map_l150_m0_e0	*	55.0840	38.0930	99.4371	95.3509	1590	2584	1590	9	4	44.4444
anovak-vg	INDEL	*	map_l150_m1_e0	hetalt	0.0000	38.0952	0.0000	0.0000	8	13	0	0	0
anovak-vg	INDEL	*	map_l150_m2_e0	hetalt	0.0000	38.0952	0.0000	0.0000	8	13	0	0	0
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	51.6683	38.0989	80.2508	24.4970	501	814	512	126	126	100.0000
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	55.0595	38.1013	99.2214	43.7774	903	1467	892	7	6	85.7143
asubramanian-gatk	SNP	*	map_l100_m1_e0	homalt	55.1894	38.1143	99.9806	78.4662	10292	16711	10292	2	0	0.0000
gduggal-snapplat	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	47.9906	38.1180	64.7645	71.6412	7571	12291	10067	5477	926	16.9071
gduggal-bwaplat	SNP	ti	map_l125_m0_e0	homalt	55.1813	38.1207	99.8832	84.5557	1712	2779	1710	2	2	100.0000
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	49.3606	38.1496	69.9029	67.8340	3208	5201	3024	1302	965	74.1167
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	41.1383	38.1818	44.5910	44.9927	504	816	845	1050	781	74.3810
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	43.3697	38.1944	50.1672	54.4901	110	178	300	298	216	72.4832
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	47.1342	38.1966	61.5321	37.8247	2639	4270	5213	3259	2660	81.6201
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	55.1982	38.2022	99.4371	43.8652	3196	5170	3180	18	16	88.8889
gduggal-bwafb	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	53.1250	38.2022	87.1795	62.1359	34	55	34	5	5	100.0000
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	43.9926	38.2022	51.8519	68.8462	68	110	84	78	56	71.7949
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	47.0936	38.2121	61.3540	79.0423	436	705	435	274	265	96.7153
anovak-vg	INDEL	I1_5	map_l100_m1_e0	het	47.9187	38.2239	64.2023	89.2961	297	480	330	184	31	16.8478
mlin-fermikit	SNP	tv	map_l150_m2_e0	het	54.9832	38.2239	97.9130	71.6136	2772	4480	2768	59	0	0.0000
jpowers-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	47.5294	38.2286	62.8109	62.6047	505	816	505	299	296	98.9967
gduggal-snapvard	INDEL	D6_15	map_l100_m1_e0	hetalt	0.0000	38.2353	0.0000	0.0000	26	42	0	0	0
gduggal-snapvard	INDEL	D6_15	map_l100_m2_e0	hetalt	0.0000	38.2353	0.0000	0.0000	26	42	0	0	0
ckim-vqsr	SNP	ti	map_l250_m0_e0	*	55.0131	38.2482	97.9439	98.4056	524	846	524	11	0	0.0000
gduggal-bwaplat	INDEL	*	map_l250_m2_e0	homalt	55.3459	38.2609	100.0000	98.0304	44	71	44	0	0

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