PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 699 700 701 702 703 704 705 706 707 ... 1720 1721 » 35101-35150 / 86044 show all
ckim-gatk	INDEL	D1_5	map_l250_m2_e1	hetalt	50.0000	33.3333	100.0000	99.4048	1	2	1	0	0
ckim-isaac	INDEL	D6_15	map_l250_m0_e0	*	50.0000	33.3333	100.0000	98.5612	2	4	2	0	0
ckim-isaac	INDEL	D6_15	map_l250_m1_e0	*	48.0000	33.3333	85.7143	97.3485	6	12	6	1	1	100.0000
ckim-isaac	INDEL	D6_15	map_l250_m2_e0	homalt	50.0000	33.3333	100.0000	92.5926	2	4	2	0	0
ckim-isaac	INDEL	D6_15	map_l250_m2_e1	homalt	50.0000	33.3333	100.0000	93.1034	2	4	2	0	0
ckim-isaac	INDEL	I16_PLUS	HG002compoundhet	homalt	3.4483	33.3333	1.8182	61.5385	1	2	1	54	53	98.1481
ckim-isaac	INDEL	I6_15	map_l125_m0_e0	*	50.0000	33.3333	100.0000	96.7949	5	10	5	0	0
ckim-isaac	INDEL	I6_15	map_l125_m0_e0	het	50.0000	33.3333	100.0000	98.4252	3	6	2	0	0
ckim-isaac	INDEL	I6_15	map_l125_m0_e0	homalt	50.0000	33.3333	100.0000	86.6667	2	4	2	0	0
ckim-isaac	INDEL	I6_15	map_l250_m1_e0	homalt	50.0000	33.3333	100.0000	95.4545	1	2	1	0	0
ckim-isaac	INDEL	I6_15	map_l250_m2_e0	homalt	50.0000	33.3333	100.0000	95.8333	1	2	1	0	0
ckim-isaac	INDEL	I6_15	map_l250_m2_e1	homalt	50.0000	33.3333	100.0000	96.1538	1	2	1	0	0
ckim-vqsr	SNP	*	map_l100_m2_e0	hetalt	50.0000	33.3333	100.0000	94.9640	14	28	14	0	0
ckim-vqsr	SNP	tv	map_l100_m2_e0	hetalt	50.0000	33.3333	100.0000	94.9640	14	28	14	0	0
egarrison-hhga	INDEL	D16_PLUS	map_l125_m1_e0	hetalt	50.0000	33.3333	100.0000	93.3333	1	2	1	0	0
egarrison-hhga	INDEL	D16_PLUS	map_l125_m2_e0	hetalt	50.0000	33.3333	100.0000	93.3333	1	2	1	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	0.0000	33.3333	0.0000	97.8261	1	2	0	2	1	50.0000
egarrison-hhga	INDEL	I16_PLUS	map_l125_m1_e0	homalt	50.0000	33.3333	100.0000	94.7368	1	2	1	0	0
egarrison-hhga	INDEL	I16_PLUS	map_l125_m2_e0	homalt	50.0000	33.3333	100.0000	96.2963	1	2	1	0	0
egarrison-hhga	INDEL	I16_PLUS	map_l125_m2_e1	homalt	50.0000	33.3333	100.0000	96.2963	1	2	1	0	0
egarrison-hhga	INDEL	I16_PLUS	map_l150_m1_e0	homalt	50.0000	33.3333	100.0000	93.3333	1	2	1	0	0
egarrison-hhga	INDEL	I16_PLUS	map_l150_m2_e0	homalt	50.0000	33.3333	100.0000	95.4545	1	2	1	0	0
egarrison-hhga	INDEL	I16_PLUS	map_l150_m2_e1	homalt	50.0000	33.3333	100.0000	95.4545	1	2	1	0	0
egarrison-hhga	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	het	40.0000	33.3333	50.0000	95.8333	3	6	1	1	0	0.0000
eyeh-varpipe	INDEL	*	decoy	homalt	48.8889	33.3333	91.6667	99.7340	1	2	11	1	1	100.0000
eyeh-varpipe	INDEL	*	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	50.0000	33.3333	100.0000	98.8764	1	2	2	0	0
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	50.0000	33.3333	100.0000	98.7805	1	2	2	0	0
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	49.2308	33.3333	94.1176	77.0270	4	8	16	1	1	100.0000
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	50.0000	33.3333	100.0000	87.8049	3	6	10	0	0
eyeh-varpipe	INDEL	D16_PLUS	map_l125_m1_e0	hetalt	50.0000	33.3333	100.0000	93.7500	1	2	1	0	0
eyeh-varpipe	INDEL	D16_PLUS	map_l125_m2_e0	hetalt	50.0000	33.3333	100.0000	94.4444	1	2	1	0	0
ckim-vqsr	INDEL	D1_5	map_l250_m1_e0	hetalt	50.0000	33.3333	100.0000	99.2647	1	2	1	0	0
ckim-vqsr	INDEL	D1_5	map_l250_m2_e0	hetalt	50.0000	33.3333	100.0000	99.3902	1	2	1	0	0
ckim-vqsr	INDEL	D1_5	map_l250_m2_e1	hetalt	50.0000	33.3333	100.0000	99.4048	1	2	1	0	0
egarrison-hhga	INDEL	C1_5	*	het		33.3333		100.0000	3	6	0	0	0
egarrison-hhga	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*		33.3333		100.0000	1	2	0	0	0
egarrison-hhga	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het		33.3333		100.0000	1	2	0	0	0
jli-custom	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	0.0000	33.3333	0.0000	0.0000	1	2	0	0	0
jli-custom	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	0.0000	33.3333	0.0000	0.0000	1	2	0	0	0
jli-custom	INDEL	D1_5	map_l250_m1_e0	hetalt	50.0000	33.3333	100.0000	99.2248	1	2	1	0	0
jli-custom	INDEL	D1_5	map_l250_m2_e0	hetalt	50.0000	33.3333	100.0000	99.3464	1	2	1	0	0
jli-custom	INDEL	D1_5	map_l250_m2_e1	hetalt	50.0000	33.3333	100.0000	99.3671	1	2	1	0	0
ghariani-varprowl	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	43.7022	33.3459	63.3893	74.0345	1772	3542	1773	1024	981	95.8008
mlin-fermikit	SNP	tv	map_l150_m0_e0	*	46.6065	33.3972	77.1018	65.0425	1394	2780	1394	414	356	85.9903
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	41.4591	33.4290	54.5667	44.1830	233	464	233	194	191	98.4536
gduggal-snapvard	INDEL	D6_15	HG002complexvar	homalt	48.4509	33.4474	87.8641	42.5384	391	778	362	50	46	92.0000
gduggal-bwavard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	44.8658	33.4523	68.1013	69.9638	2813	5596	2769	1297	1197	92.2899
mlin-fermikit	SNP	*	map_l250_m2_e1	*	47.5699	33.4544	82.2913	80.2109	2672	5315	2672	575	501	87.1304
asubramanian-gatk	SNP	tv	map_l125_m2_e1	het	50.1525	33.4976	99.7460	93.1412	3535	7018	3534	9	2	22.2222
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	41.5098	33.5081	54.5317	83.3700	1214	2409	1444	1204	29	2.4086

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge