PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35051-35100 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 33.3333 | 50.0000 | 98.1982 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | decoy | het | 42.1053 | 33.3333 | 57.1429 | 99.9727 | 2 | 4 | 4 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | decoy | homalt | 50.0000 | 33.3333 | 100.0000 | 99.9610 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m0_e0 | het | 40.0000 | 33.3333 | 50.0000 | 90.4762 | 3 | 6 | 3 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m1_e0 | het | 40.0000 | 33.3333 | 50.0000 | 93.9394 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e0 | het | 40.0000 | 33.3333 | 50.0000 | 95.0000 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e1 | het | 40.0000 | 33.3333 | 50.0000 | 95.1220 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 3 | 6 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 33.3333 | 0.0000 | 99.6894 | 2 | 4 | 0 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m1_e0 | het | 48.2759 | 33.3333 | 87.5000 | 86.8852 | 2 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e0 | het | 48.2759 | 33.3333 | 87.5000 | 88.4058 | 2 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e1 | het | 48.2759 | 33.3333 | 87.5000 | 88.7324 | 2 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | func_cds | homalt | 50.0000 | 33.3333 | 100.0000 | 0.0000 | 5 | 10 | 5 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 0.0000 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | C1_5 | * | het | 0.0000 | 33.3333 | 0.0000 | 92.0354 | 3 | 6 | 0 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 40.0000 | 33.3333 | 50.0000 | 99.4652 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7183 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7455 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7500 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 33.3333 | 100.0000 | 98.5294 | 2 | 4 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | het | 47.3684 | 33.3333 | 81.8182 | 96.8208 | 20 | 40 | 9 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 94.4954 | 8 | 16 | 6 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m1_e0 | het | 44.4444 | 33.3333 | 66.6667 | 96.7213 | 13 | 26 | 8 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 42.3256 | 33.3333 | 57.9618 | 80.3504 | 89 | 178 | 91 | 66 | 2 | 3.0303 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.3392 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.4175 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 43.1655 | 33.3333 | 61.2245 | 89.3709 | 29 | 58 | 30 | 19 | 14 | 73.6842 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 98.4848 | 1 | 2 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 98.6842 | 1 | 2 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 98.7342 | 1 | 2 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 33.3333 | 33.3333 | 33.3333 | 97.4576 | 2 | 4 | 2 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | I16_PLUS | HG002compoundhet | homalt | 0.9434 | 33.3333 | 0.4785 | 52.5000 | 1 | 2 | 2 | 416 | 387 | 93.0288 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 37.0370 | 33.3333 | 41.6667 | 99.0603 | 5 | 10 | 5 | 7 | 4 | 57.1429 | |
| ciseli-custom | SNP | * | map_l150_m0_e0 | hetalt | 33.3333 | 33.3333 | 33.3333 | 90.9091 | 1 | 2 | 1 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 29.0131 | 33.3333 | 25.6842 | 96.3865 | 1 | 2 | 122 | 353 | 87 | 24.6459 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 42.0382 | 33.3333 | 56.8966 | 98.7039 | 1 | 2 | 33 | 25 | 3 | 12.0000 | |
| ciseli-custom | SNP | ti | map_l150_m0_e0 | hetalt | 40.0000 | 33.3333 | 50.0000 | 90.4762 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l150_m0_e0 | hetalt | 33.3333 | 33.3333 | 33.3333 | 90.9091 | 1 | 2 | 1 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.7952 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.2143 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.7952 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 33.3333 | 100.0000 | 98.9011 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | C1_5 | * | het | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 3 | 6 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.2647 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.3902 | 1 | 2 | 1 | 0 | 0 | ||