PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35001-35050 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | * | 42.8571 | 33.3333 | 60.0000 | 89.0110 | 5 | 10 | 6 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | het | 47.0588 | 33.3333 | 80.0000 | 89.3617 | 3 | 6 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | homalt | 36.3636 | 33.3333 | 40.0000 | 87.1795 | 2 | 4 | 2 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m1_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 94.2857 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 94.8718 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e1 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.2381 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.9011 | 1 | 2 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.7342 | 1 | 2 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | het | 48.6111 | 33.3333 | 89.7436 | 93.3504 | 70 | 140 | 70 | 8 | 1 | 12.5000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m1_e0 | het | 33.3333 | 33.3333 | 33.3333 | 94.0000 | 1 | 2 | 1 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e0 | het | 28.5714 | 33.3333 | 25.0000 | 94.0299 | 1 | 2 | 1 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e1 | het | 28.5714 | 33.3333 | 25.0000 | 94.2029 | 1 | 2 | 1 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 97.5000 | 1 | 2 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 80.0000 | 2 | 4 | 2 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.7447 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.8333 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 44.4444 | 33.3333 | 66.6667 | 99.0244 | 2 | 4 | 4 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | map_l250_m0_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.4979 | 3 | 6 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 93.3333 | 1 | 2 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.6667 | 1 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.6667 | 1 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | homalt | 47.0588 | 33.3333 | 80.0000 | 93.9759 | 1 | 2 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | homalt | 47.6190 | 33.3333 | 83.3333 | 93.5484 | 1 | 2 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e1 | homalt | 47.6190 | 33.3333 | 83.3333 | 93.7500 | 1 | 2 | 5 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 33.3333 | 0.0000 | 99.1228 | 1 | 2 | 0 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.1538 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 97.2222 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 97.2222 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.0000 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.5294 | 1 | 2 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.6486 | 1 | 2 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.7179 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | decoy | het | 50.0000 | 33.3333 | 100.0000 | 99.9964 | 2 | 4 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | decoy | homalt | 50.0000 | 33.3333 | 100.0000 | 99.9779 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7899 | 2 | 4 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.8188 | 2 | 4 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.8221 | 2 | 4 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.8750 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.9697 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 97.0588 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 66.6667 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 66.6667 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 33.3333 | 50.0000 | 98.1982 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 25.0000 | 33.3333 | 20.0000 | 98.9024 | 9 | 18 | 9 | 36 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 28.5714 | 33.3333 | 25.0000 | 98.3968 | 2 | 4 | 2 | 6 | 0 | 0.0000 | |