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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 693 694 695 696 697 698 699 700 701 ... 1720 1721 » 34801-34850 / 86044 show all
mlin-fermikit	SNP	ti	map_l125_m0_e0	het	49.2645	32.8331	98.6182	61.3058	2713	5550	2712	38	3	7.8947
gduggal-snapplat	INDEL	D6_15	map_l150_m2_e0	*	46.1771	32.9268	77.2727	96.4573	27	55	17	5	1	20.0000
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	43.2760	32.9738	62.9412	68.5185	214	435	214	126	91	72.2222
anovak-vg	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	0.0000	32.9741	0.0000	0.0000	1958	3980	0	0	0
gduggal-bwaplat	SNP	ti	map_l250_m0_e0	het	49.4382	32.9764	98.7179	98.7999	308	626	308	4	0	0.0000
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	35.8287	33.0357	39.1376	73.2950	703	1425	708	1101	1085	98.5468
asubramanian-gatk	SNP	ti	map_l100_m0_e0	het	49.6427	33.0401	99.7840	91.6649	4620	9363	4620	10	5	50.0000
asubramanian-gatk	SNP	*	map_l125_m1_e0	het	49.6482	33.0516	99.7236	92.3828	9384	19008	9381	26	6	23.0769
mlin-fermikit	INDEL	D1_5	map_l250_m2_e0	het	49.0643	33.0579	95.1220	92.7690	40	81	39	2	0	0.0000
anovak-vg	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	0.0000	33.0618	0.0000	0.0000	1258	2547	0	0	0
gduggal-snapplat	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	32.5229	33.1367	31.9314	80.3989	1292	2607	1321	2816	99	3.5156
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	42.0732	33.1541	57.5573	69.3357	2096	4226	2083	1536	1445	94.0755
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	42.0732	33.1541	57.5573	69.3357	2096	4226	2083	1536	1445	94.0755
mlin-fermikit	INDEL	*	map_l250_m2_e1	het	48.4429	33.1754	89.7436	93.5537	70	141	70	8	1	12.5000
jpowers-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	40.4624	33.1754	51.8519	75.6757	70	141	70	65	58	89.2308
ciseli-custom	INDEL	D1_5	HG002compoundhet	het	30.2760	33.1981	27.8267	77.5472	573	1153	1105	2866	1255	43.7893
ghariani-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	34.5163	33.2073	35.9327	70.3914	2020	4063	2009	3582	3513	98.0737
mlin-fermikit	SNP	*	map_l250_m2_e0	*	47.3085	33.2150	82.1776	79.9585	2619	5266	2619	568	495	87.1479
jpowers-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	45.1608	33.2536	70.3518	57.5693	139	279	140	59	58	98.3051
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	37.9771	33.2554	44.2615	81.8105	711	1427	860	1083	11	1.0157
asubramanian-gatk	SNP	tv	map_l125_m2_e0	het	49.8851	33.2599	99.7415	93.1706	3473	6969	3472	9	2	22.2222
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	49.6674	33.2688	97.9463	41.1847	1546	3101	2480	52	48	92.3077
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	49.8117	33.2739	99.0333	46.0603	933	1871	922	9	8	88.8889
anovak-vg	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	39.1152	33.2790	47.4335	60.0049	613	1229	767	850	647	76.1176
gduggal-bwaplat	SNP	ti	map_l150_m0_e0	homalt	49.9321	33.2850	99.8913	89.4326	919	1842	919	1	1	100.0000
jpowers-varprowl	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	42.4175	33.3041	58.3975	75.7745	380	761	379	270	267	98.8889
jpowers-varprowl	INDEL	I16_PLUS	map_l125_m0_e0	*	40.0000	33.3333	50.0000	85.7143	2	4	2	2	2	100.0000
jpowers-varprowl	INDEL	I6_15	map_l125_m0_e0	het	42.8571	33.3333	60.0000	96.2963	3	6	3	2	2	100.0000
jpowers-varprowl	INDEL	I6_15	map_l250_m1_e0	homalt	50.0000	33.3333	100.0000	96.2963	1	2	1	0	0
jpowers-varprowl	INDEL	I6_15	map_l250_m2_e0	homalt	50.0000	33.3333	100.0000	96.4286	1	2	1	0	0
jpowers-varprowl	INDEL	I6_15	map_l250_m2_e1	homalt	50.0000	33.3333	100.0000	96.5517	1	2	1	0	0
jpowers-varprowl	INDEL	I6_15	tech_badpromoters	homalt	50.0000	33.3333	100.0000	66.6667	1	2	1	0	0
jmaeng-gatk	SNP	tv	map_l150_m0_e0	hetalt	50.0000	33.3333	100.0000	99.0476	1	2	1	0	0
ltrigg-rtg1	INDEL	I16_PLUS	map_l100_m1_e0	hetalt		33.3333		100.0000	1	2	0	0	0
ltrigg-rtg1	INDEL	I16_PLUS	map_l100_m2_e0	hetalt		33.3333		100.0000	1	2	0	0	0
ltrigg-rtg1	INDEL	I16_PLUS	map_l100_m2_e1	hetalt		33.3333		100.0000	1	2	0	0	0
ltrigg-rtg1	INDEL	I16_PLUS	map_l125_m0_e0	*	44.4444	33.3333	66.6667	88.0000	2	4	2	1	0	0.0000
ltrigg-rtg1	INDEL	I16_PLUS	map_l125_m0_e0	het	40.0000	33.3333	50.0000	81.8182	1	2	1	1	0	0.0000
ltrigg-rtg1	INDEL	I16_PLUS	map_l125_m1_e0	hetalt		33.3333		100.0000	1	2	0	0	0
ltrigg-rtg1	INDEL	I16_PLUS	map_l125_m2_e0	hetalt		33.3333		100.0000	1	2	0	0	0
ltrigg-rtg1	INDEL	I16_PLUS	map_l125_m2_e1	hetalt		33.3333		100.0000	1	2	0	0	0
jmaeng-gatk	INDEL	D1_5	map_l250_m1_e0	hetalt	50.0000	33.3333	100.0000	99.3151	1	2	1	0	0
jmaeng-gatk	INDEL	D1_5	map_l250_m2_e0	hetalt	50.0000	33.3333	100.0000	99.4286	1	2	1	0	0
jmaeng-gatk	INDEL	D1_5	map_l250_m2_e1	hetalt	50.0000	33.3333	100.0000	99.4444	1	2	1	0	0
jmaeng-gatk	SNP	*	map_l150_m0_e0	hetalt	50.0000	33.3333	100.0000	99.0476	1	2	1	0	0
jmaeng-gatk	SNP	ti	map_l150_m0_e0	hetalt	50.0000	33.3333	100.0000	98.4615	1	2	1	0	0
ltrigg-rtg2	INDEL	I16_PLUS	map_l100_m1_e0	hetalt		33.3333		100.0000	1	2	0	0	0
ltrigg-rtg2	INDEL	I16_PLUS	map_l100_m2_e0	hetalt		33.3333		100.0000	1	2	0	0	0
ltrigg-rtg2	INDEL	I16_PLUS	map_l100_m2_e1	hetalt		33.3333		100.0000	1	2	0	0	0
ltrigg-rtg2	INDEL	I16_PLUS	map_l125_m1_e0	hetalt		33.3333		100.0000	1	2	0	0	0

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