PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34651-34700 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 31.0612 | 0.0000 | 0.0000 | 401 | 890 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.9391 | 31.0680 | 18.1818 | 56.7921 | 64 | 142 | 48 | 216 | 4 | 1.8519 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 47.0588 | 31.0680 | 96.9697 | 73.0612 | 64 | 142 | 64 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 35.3662 | 31.0680 | 41.0448 | 83.2080 | 64 | 142 | 55 | 79 | 42 | 53.1646 | |
| gduggal-snapplat | INDEL | D6_15 | HG002complexvar | * | 44.3210 | 31.1015 | 77.0858 | 66.5750 | 1649 | 3653 | 1312 | 390 | 129 | 33.0769 | |
| gduggal-snapvard | INDEL | I6_15 | map_siren | homalt | 46.8227 | 31.1111 | 94.5946 | 68.9076 | 28 | 62 | 35 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | segdup | hetalt | 47.4576 | 31.1111 | 100.0000 | 91.1243 | 14 | 31 | 15 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 43.9656 | 31.1283 | 74.8222 | 59.1398 | 1087 | 2405 | 1052 | 354 | 57 | 16.1017 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 46.3980 | 31.1475 | 90.9091 | 61.1765 | 19 | 42 | 30 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 44.9704 | 31.1475 | 80.8511 | 62.9921 | 38 | 84 | 38 | 9 | 6 | 66.6667 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 43.5045 | 31.1688 | 72.0000 | 59.1837 | 144 | 318 | 144 | 56 | 49 | 87.5000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m1_e0 | homalt | 47.5332 | 31.1761 | 100.0000 | 95.0135 | 501 | 1106 | 500 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 41.8443 | 31.2155 | 63.4483 | 59.6100 | 113 | 249 | 92 | 53 | 49 | 92.4528 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 33.7717 | 31.2245 | 36.7713 | 63.1405 | 153 | 337 | 246 | 423 | 326 | 77.0686 | |
| anovak-vg | INDEL | I1_5 | * | hetalt | 0.0000 | 31.2282 | 0.0000 | 0.0000 | 3496 | 7699 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 41.2069 | 31.2292 | 60.5536 | 61.3636 | 188 | 414 | 175 | 114 | 98 | 85.9649 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 31.2294 | 0.0000 | 0.0000 | 569 | 1253 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | HG002compoundhet | hetalt | 0.0000 | 31.2338 | 0.0000 | 0.0000 | 3491 | 7686 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 31.2500 | 0.0000 | 0.0000 | 15 | 33 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m0_e0 | * | 47.6190 | 31.2500 | 100.0000 | 98.8221 | 10 | 22 | 10 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 38.9465 | 31.2500 | 51.6729 | 83.5071 | 150 | 330 | 139 | 130 | 89 | 68.4615 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | * | 39.8551 | 31.2500 | 55.0000 | 90.0498 | 10 | 22 | 11 | 9 | 5 | 55.5556 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m1_e0 | homalt | 47.6190 | 31.2500 | 100.0000 | 93.2692 | 20 | 44 | 14 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | * | 44.8505 | 31.2500 | 79.4118 | 95.5145 | 40 | 88 | 27 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | het | 44.0534 | 31.2977 | 74.3590 | 93.8389 | 41 | 90 | 29 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 43.7439 | 31.3305 | 72.4490 | 90.3733 | 73 | 160 | 71 | 27 | 10 | 37.0370 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 25.4980 | 31.3725 | 21.4765 | 98.0147 | 32 | 70 | 32 | 117 | 5 | 4.2735 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 44.0640 | 31.3725 | 74.0000 | 55.3571 | 32 | 70 | 37 | 13 | 12 | 92.3077 | |
| asubramanian-gatk | SNP | * | map_l125_m2_e0 | * | 47.7392 | 31.3764 | 99.7686 | 91.5938 | 14660 | 32063 | 14657 | 34 | 8 | 23.5294 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | * | 46.9565 | 31.3953 | 93.1034 | 90.6149 | 27 | 59 | 27 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 47.8261 | 31.4286 | 100.0000 | 96.1938 | 11 | 24 | 11 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 47.8261 | 31.4286 | 100.0000 | 64.5161 | 11 | 24 | 11 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 35.4839 | 31.4286 | 40.7407 | 83.1250 | 11 | 24 | 11 | 16 | 15 | 93.7500 | |
| ciseli-custom | INDEL | I6_15 | * | het | 44.4423 | 31.4363 | 75.8046 | 53.6729 | 3154 | 6879 | 3227 | 1030 | 925 | 89.8058 | |
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | hetalt | 47.0062 | 31.4516 | 93.0000 | 92.1198 | 39 | 85 | 93 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 44.1354 | 31.4607 | 73.9130 | 57.1429 | 28 | 61 | 51 | 18 | 18 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | map_l150_m0_e0 | homalt | 47.8809 | 31.4759 | 100.0000 | 91.3619 | 418 | 910 | 418 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 44.9438 | 31.4961 | 78.4314 | 66.6667 | 40 | 87 | 40 | 11 | 11 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 44.9438 | 31.4961 | 78.4314 | 66.6667 | 40 | 87 | 40 | 11 | 11 | 100.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 36.3779 | 31.5041 | 43.0357 | 63.8943 | 155 | 337 | 241 | 319 | 270 | 84.6395 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m1_e0 | * | 45.0392 | 31.5068 | 78.9474 | 96.7298 | 23 | 50 | 15 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | * | 41.1326 | 31.5789 | 58.9744 | 81.6901 | 24 | 52 | 23 | 16 | 1 | 6.2500 | |
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 31.5789 | 0.0000 | 0.0000 | 6 | 13 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 31.5789 | 0.0000 | 0.0000 | 6 | 13 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 46.4088 | 31.5789 | 87.5000 | 93.2773 | 6 | 13 | 7 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | het | 46.6926 | 31.5789 | 89.5522 | 92.7095 | 60 | 130 | 60 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | SNP | * | map_l125_m2_e1 | * | 47.9740 | 31.5792 | 99.7724 | 91.5607 | 14906 | 32296 | 14903 | 34 | 8 | 23.5294 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 45.3687 | 31.5895 | 80.4688 | 67.2634 | 157 | 340 | 103 | 25 | 24 | 96.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 47.4332 | 31.5939 | 95.1220 | 44.9136 | 1114 | 2412 | 1092 | 56 | 43 | 76.7857 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 47.4332 | 31.5939 | 95.1220 | 44.9136 | 1114 | 2412 | 1092 | 56 | 43 | 76.7857 | |