PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34251-34300 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e0 | * | 41.1429 | 26.6667 | 90.0000 | 76.1905 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e1 | * | 41.1429 | 26.6667 | 90.0000 | 76.7442 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | map_l150_m1_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 66.6667 | 4 | 11 | 4 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l150_m2_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 73.3333 | 4 | 11 | 4 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l150_m2_e1 | hetalt | 42.1053 | 26.6667 | 100.0000 | 75.0000 | 4 | 11 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l150_m1_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 96.1538 | 4 | 11 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l150_m2_e0 | hetalt | 42.1053 | 26.6667 | 100.0000 | 96.7742 | 4 | 11 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l150_m2_e1 | hetalt | 42.1053 | 26.6667 | 100.0000 | 96.7742 | 4 | 11 | 4 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 31.1863 | 26.6694 | 37.5453 | 73.7371 | 643 | 1768 | 933 | 1552 | 633 | 40.7861 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e0 | homalt | 42.1230 | 26.6809 | 100.0000 | 96.2620 | 250 | 687 | 250 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | * | het | 38.2803 | 26.6836 | 67.7044 | 67.2836 | 21091 | 57950 | 25553 | 12189 | 4021 | 32.9888 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 29.0460 | 26.6974 | 31.8478 | 58.4515 | 1624 | 4459 | 1615 | 3456 | 3422 | 99.0162 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 35.0403 | 26.6990 | 50.9615 | 85.3315 | 55 | 151 | 53 | 51 | 50 | 98.0392 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e0 | het | 41.9263 | 26.7010 | 97.5518 | 84.3317 | 518 | 1422 | 518 | 13 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 38.9082 | 26.7241 | 71.5116 | 73.2919 | 124 | 340 | 123 | 49 | 41 | 83.6735 | |
| asubramanian-gatk | SNP | * | map_l125_m2_e1 | homalt | 42.1801 | 26.7283 | 99.9787 | 88.0838 | 4686 | 12846 | 4686 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 40.6561 | 26.7327 | 84.8485 | 99.0214 | 27 | 74 | 28 | 5 | 3 | 60.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 31.0023 | 26.7606 | 36.8421 | 38.3117 | 19 | 52 | 35 | 60 | 46 | 76.6667 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 41.0416 | 26.7677 | 87.9310 | 92.1196 | 53 | 145 | 51 | 7 | 4 | 57.1429 | |
| gduggal-snapplat | INDEL | I6_15 | HG002complexvar | * | 38.3420 | 26.7738 | 67.5124 | 60.4148 | 1283 | 3509 | 1224 | 589 | 145 | 24.6180 | |
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | homalt | 42.2477 | 26.7811 | 100.0000 | 86.1726 | 1030 | 2816 | 1030 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_siren | hetalt | 38.7454 | 26.7857 | 70.0000 | 97.4795 | 30 | 82 | 28 | 12 | 6 | 50.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 36.8301 | 26.7943 | 58.8859 | 77.4791 | 224 | 612 | 222 | 155 | 153 | 98.7097 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 35.4839 | 26.8293 | 52.3810 | 97.9866 | 11 | 30 | 11 | 10 | 4 | 40.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 41.7062 | 26.8293 | 93.6170 | 94.3914 | 44 | 120 | 44 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | homalt | 42.3333 | 26.8499 | 100.0000 | 96.2581 | 254 | 692 | 254 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | HG002complexvar | het | 38.9411 | 26.8910 | 70.5590 | 64.8625 | 839 | 2281 | 568 | 237 | 24 | 10.1266 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 26.8987 | 0.0000 | 0.0000 | 85 | 231 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 32.9974 | 26.9036 | 42.6601 | 71.8368 | 318 | 864 | 433 | 582 | 472 | 81.0997 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 42.4242 | 26.9231 | 100.0000 | 92.4731 | 7 | 19 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 42.4242 | 26.9231 | 100.0000 | 92.4731 | 7 | 19 | 7 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 40.3286 | 26.9258 | 80.2982 | 58.7796 | 755 | 2049 | 754 | 185 | 171 | 92.4324 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 40.3388 | 26.9615 | 80.0636 | 58.9286 | 756 | 2048 | 755 | 188 | 171 | 90.9574 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 38.1445 | 26.9663 | 65.1515 | 73.2794 | 48 | 130 | 43 | 23 | 4 | 17.3913 | |
| asubramanian-gatk | SNP | ti | map_l150_m1_e0 | het | 42.4790 | 26.9846 | 99.7608 | 94.8360 | 3338 | 9032 | 3336 | 8 | 4 | 50.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 33.7796 | 27.0106 | 45.0758 | 47.5149 | 356 | 962 | 357 | 435 | 415 | 95.4023 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 42.0664 | 27.0142 | 95.0000 | 71.0145 | 57 | 154 | 57 | 3 | 3 | 100.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e1 | het | 42.3276 | 27.0229 | 97.6103 | 84.4394 | 531 | 1434 | 531 | 13 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | map_l150_m2_e0 | het | 42.5209 | 27.0270 | 99.6439 | 95.4728 | 1960 | 5292 | 1959 | 7 | 1 | 14.2857 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 37.4335 | 27.0492 | 60.7595 | 65.3509 | 33 | 89 | 48 | 31 | 14 | 45.1613 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 39.6010 | 27.0677 | 73.7500 | 90.5101 | 72 | 194 | 59 | 21 | 4 | 19.0476 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 37.9562 | 27.0833 | 63.4146 | 40.5797 | 52 | 140 | 52 | 30 | 24 | 80.0000 | |
| anovak-vg | INDEL | I1_5 | segdup | hetalt | 0.0000 | 27.0833 | 0.0000 | 0.0000 | 13 | 35 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 27.1056 | 0.0000 | 0.0000 | 1474 | 3964 | 0 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l250_m0_e0 | * | 40.4330 | 27.1194 | 79.4239 | 82.2628 | 579 | 1556 | 579 | 150 | 132 | 88.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 37.5202 | 27.1605 | 60.6557 | 60.8974 | 22 | 59 | 37 | 24 | 17 | 70.8333 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 36.4602 | 27.1762 | 55.3790 | 36.8827 | 256 | 686 | 1359 | 1095 | 912 | 83.2877 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 27.1889 | 0.0000 | 0.0000 | 59 | 158 | 0 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l150_m2_e1 | het | 42.7242 | 27.1911 | 99.6507 | 95.4527 | 1998 | 5350 | 1997 | 7 | 1 | 14.2857 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 27.2460 | 0.0000 | 0.0000 | 1856 | 4956 | 0 | 0 | 0 | ||