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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
33951-34000 / 86044 show all
eyeh-varpipeINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
32.5233
24.3750
48.8550
47.4950
39121128134134
100.0000
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
24.4075
0.0000
0.0000
19676092000
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
24.4075
0.0000
0.0000
19676092000
asubramanian-gatkSNPtimap_l150_m1_e0*
39.2304
24.4115
99.8340
94.1489
481214900481084
50.0000
anovak-vgINDELI16_PLUSmap_siren*
33.6000
24.4186
53.8462
69.2913
2165211816
88.8889
asubramanian-gatkSNPtvmap_l150_m2_e0*
39.2587
24.4386
99.7483
94.9137
27758580277471
14.2857
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
34.0836
24.4547
56.2198
65.7568
9532944931725695
95.8621
gduggal-bwaplatINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
38.9486
24.4745
95.3216
91.4756
16350316382
25.0000
gduggal-bwaplatINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
38.9486
24.4745
95.3216
91.4756
16350316382
25.0000
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
24.4860
0.0000
0.0000
131404000
gduggal-snapplatINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
37.8549
24.4898
83.3333
85.3659
12371021
50.0000
gduggal-snapfbINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
39.3617
24.5033
100.0000
15.9091
371143700
asubramanian-gatkSNPtimap_l125_m0_e0het
39.3510
24.5068
99.8029
95.3774
20256238202544
100.0000
gduggal-bwavardINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200homalt
39.3701
24.5098
100.0000
62.5000
25772400
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
29.6071
24.5130
37.3737
73.8468
302930481806369
45.7816
anovak-vgINDELI16_PLUSHG002complexvar*
33.1975
24.5225
51.3699
42.4631
321988300284225
79.2254
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
24.5742
0.0000
0.0000
101310000
anovak-vgINDELD6_15HG002compoundhethetalt
0.0000
24.5859
0.0000
0.0000
20046147000
ghariani-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
38.2166
24.5902
85.7143
80.9783
1203681202020
100.0000
ciseli-customINDELI6_15map_l100_m2_e0het
37.0370
24.5902
75.0000
90.9910
15461555
100.0000
ciseli-customINDELI6_15map_l100_m2_e1het
37.0370
24.5902
75.0000
91.0314
15461555
100.0000
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
38.3912
24.5902
87.5000
85.5856
15461421
50.0000
jpowers-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
38.1558
24.5902
85.1064
80.8424
1203681202121
100.0000
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
26.7554
24.6259
29.2880
56.6011
181554181437436
99.7712
anovak-vgINDELD6_15*hetalt
0.0000
24.6269
0.0000
0.0000
20136161000
gduggal-snapplatINDELI6_15HG002complexvarhomalt
34.0455
24.6293
55.1181
60.1881
299915280228101
44.2982
asubramanian-gatkSNPtvmap_l150_m2_e1*
39.5063
24.6305
99.7534
94.8804
28338669283271
14.2857
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
24.6377
0.0000
0.0000
1752000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
29.7872
24.6479
37.6344
33.0935
35107355857
98.2759
gduggal-bwavardINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
28.6792
24.6753
34.2342
68.3084
152464152292286
97.9452
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
24.6835
0.0000
0.0000
156476000
ciseli-customINDELI6_15**
35.4599
24.6948
62.8636
46.3768
613018693609436003400
94.4444
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
34.8549
24.7113
59.1245
71.3782
9632934959663642
96.8326
ckim-vqsrSNPtimap_l150_m1_e0homalt
39.6323
24.7168
99.9448
90.0193
18115516181111
100.0000
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
34.4736
24.7232
56.9231
34.0999
737224415171148971
84.5819
gduggal-snapplatINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
27.4935
24.7277
30.9558
84.2395
999304112762846368
12.9304
eyeh-varpipeINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
36.8670
24.7423
72.2944
43.7956
96292334128127
99.2188
ckim-isaacINDELD16_PLUSmap_l100_m2_e1*
37.7178
24.7423
79.3103
92.0330
24732363
50.0000
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
33.2379
24.7453
50.6061
78.6131
170517167163160
98.1595
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.1333
24.7505
50.1027
71.7681
248754244243215
88.4774
anovak-vgINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
32.8267
24.7508
48.7252
53.0585
149453172181136
75.1381
gduggal-bwaplatSNPtvmap_l250_m1_e0homalt
39.7004
24.7664
100.0000
96.2311
21264421200
ckim-isaacINDELI16_PLUSHG002complexvarhetalt
38.7208
24.7761
88.5714
62.2302
83252931210
83.3333
ciseli-customINDELI6_15HG002complexvar*
36.3268
24.7913
67.9389
56.5783
118836041157546471
86.2637
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
24.8474
0.0000
0.0000
342010344000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
24.8860
0.0000
0.0000
349210540000
anovak-vgINDELI6_15HG002complexvarhetalt
0.0000
24.9387
0.0000
0.0000
305918000
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
30.1806
24.9718
38.1353
46.7618
663199295315461250
80.8538
asubramanian-gatkSNPtvmap_l125_m2_e0homalt
39.9681
24.9792
99.9335
89.0706
15034514150310
0.0000
asubramanian-gatkSNPtvmap_l150_m1_e0hetalt
40.0000
25.0000
100.0000
94.6237
515500