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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33651-33700 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 32.0388 | 20.3704 | 75.0000 | 58.7629 | 22 | 86 | 30 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 31.0781 | 20.3704 | 65.5172 | 56.3910 | 22 | 86 | 38 | 20 | 20 | 100.0000 | |
| asubramanian-gatk | SNP | * | map_l250_m2_e0 | het | 33.8604 | 20.4082 | 99.3440 | 98.5469 | 1060 | 4134 | 1060 | 7 | 1 | 14.2857 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 28.7100 | 20.4082 | 48.3974 | 46.2069 | 150 | 585 | 151 | 161 | 125 | 77.6398 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 20.4082 | 0.0000 | 0.0000 | 10 | 39 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 24.2522 | 20.4082 | 29.8805 | 51.4507 | 150 | 585 | 150 | 352 | 340 | 96.5909 | |
| asubramanian-gatk | SNP | ti | map_l250_m1_e0 | het | 33.8831 | 20.4178 | 99.5074 | 98.4836 | 606 | 2362 | 606 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 31.0297 | 20.4204 | 64.5833 | 56.8123 | 136 | 530 | 217 | 119 | 119 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 31.0297 | 20.4204 | 64.5833 | 56.8123 | 136 | 530 | 217 | 119 | 119 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 32.4371 | 20.4225 | 78.7879 | 49.2308 | 29 | 113 | 26 | 7 | 4 | 57.1429 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 20.4545 | 0.0000 | 0.0000 | 9 | 35 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 20.4566 | 0.0000 | 0.0000 | 448 | 1742 | 0 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 34.0000 | 20.4819 | 100.0000 | 32.0000 | 17 | 66 | 17 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 29.8387 | 20.4965 | 54.8298 | 62.6973 | 611 | 2370 | 596 | 491 | 477 | 97.1487 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 29.7781 | 20.5030 | 54.3776 | 66.9455 | 799 | 3098 | 795 | 667 | 654 | 98.0510 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 20.5128 | 0.0000 | 0.0000 | 8 | 31 | 0 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l250_m2_e1 | het | 34.0104 | 20.5167 | 99.3560 | 98.5506 | 1080 | 4184 | 1080 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | SNP | * | map_l150_m0_e0 | het | 34.0434 | 20.5290 | 99.6333 | 97.2059 | 1630 | 6310 | 1630 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 29.6006 | 20.5326 | 53.0130 | 62.9452 | 717 | 2775 | 695 | 616 | 592 | 96.1039 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 33.0430 | 20.5706 | 83.9344 | 60.8974 | 137 | 529 | 256 | 49 | 49 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 33.0430 | 20.5706 | 83.9344 | 60.8974 | 137 | 529 | 256 | 49 | 49 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 31.2372 | 20.6053 | 64.5372 | 76.8976 | 497 | 1915 | 495 | 272 | 252 | 92.6471 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 20.6568 | 0.0000 | 0.0000 | 195 | 749 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 29.8082 | 20.6612 | 53.4884 | 75.0000 | 50 | 192 | 46 | 40 | 2 | 5.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e0 | homalt | 34.2487 | 20.6627 | 100.0000 | 97.0120 | 555 | 2131 | 555 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 31.9191 | 20.6647 | 70.0935 | 57.9568 | 342 | 1313 | 300 | 128 | 30 | 23.4375 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.0890 | 20.6844 | 39.2387 | 39.7707 | 272 | 1043 | 268 | 415 | 363 | 87.4699 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 26.7835 | 20.7451 | 37.7805 | 22.4371 | 245 | 936 | 303 | 499 | 460 | 92.1844 | |
| asubramanian-gatk | SNP | tv | map_l125_m0_e0 | * | 34.3571 | 20.7510 | 99.7825 | 95.7011 | 1376 | 5255 | 1376 | 3 | 1 | 33.3333 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 24.4217 | 20.7792 | 29.6128 | 67.8388 | 128 | 488 | 130 | 309 | 308 | 99.6764 | |
| ckim-vqsr | SNP | tv | map_l125_m0_e0 | homalt | 34.4391 | 20.8014 | 100.0000 | 91.7691 | 462 | 1759 | 462 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 26.7429 | 20.8134 | 37.3970 | 59.0695 | 174 | 662 | 227 | 380 | 217 | 57.1053 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e0 | homalt | 34.4676 | 20.8223 | 100.0000 | 92.2232 | 2436 | 9263 | 2436 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l250_m2_e1 | homalt | 34.4702 | 20.8241 | 100.0000 | 96.9977 | 566 | 2152 | 566 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | segdup | het | 34.4828 | 20.8333 | 100.0000 | 91.2281 | 5 | 19 | 5 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 34.4828 | 20.8333 | 100.0000 | 90.9091 | 5 | 19 | 5 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 34.4828 | 20.8333 | 100.0000 | 91.2281 | 5 | 19 | 5 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 25.6410 | 20.8333 | 33.3333 | 90.9091 | 5 | 19 | 5 | 10 | 9 | 90.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 29.0805 | 20.8955 | 47.8070 | 73.7629 | 112 | 424 | 109 | 119 | 119 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 23.7409 | 20.8999 | 27.4757 | 50.6350 | 576 | 2180 | 566 | 1494 | 1477 | 98.8621 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 26.8531 | 20.9150 | 37.5000 | 78.8079 | 32 | 121 | 24 | 40 | 15 | 37.5000 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e1 | homalt | 34.6568 | 20.9605 | 100.0000 | 92.1810 | 2479 | 9348 | 2479 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 30.6992 | 20.9726 | 57.2507 | 58.7917 | 1449 | 5460 | 1441 | 1076 | 1033 | 96.0037 | |
| ckim-isaac | INDEL | D16_PLUS | map_siren | * | 32.6087 | 20.9790 | 73.1707 | 91.1638 | 30 | 113 | 30 | 11 | 6 | 54.5455 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m0_e0 | het | 27.5862 | 21.0526 | 40.0000 | 91.3793 | 4 | 15 | 4 | 6 | 1 | 16.6667 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 21.0526 | 0.0000 | 0.0000 | 4 | 15 | 0 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 25.9640 | 21.0884 | 33.7719 | 34.7639 | 155 | 580 | 154 | 302 | 292 | 96.6887 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 33.7079 | 21.1268 | 83.3333 | 85.3659 | 15 | 56 | 15 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l150_m0_e0 | het | 34.9037 | 21.1497 | 99.8148 | 97.0413 | 1078 | 4019 | 1078 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 31.1683 | 21.1733 | 59.0373 | 57.3384 | 1256 | 4676 | 1251 | 868 | 834 | 96.0829 | |