PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33401-33450 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 26.6407 | 17.5625 | 55.1471 | 66.3088 | 232 | 1089 | 225 | 183 | 170 | 92.8962 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 28.9593 | 17.5631 | 82.4742 | 66.3778 | 320 | 1502 | 320 | 68 | 51 | 75.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 22.7672 | 17.5860 | 32.2767 | 75.3288 | 271 | 1270 | 224 | 470 | 9 | 1.9149 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 28.5000 | 17.5926 | 75.0000 | 88.5167 | 19 | 89 | 18 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | SNP | ti | map_l250_m2_e1 | homalt | 29.9424 | 17.6072 | 100.0000 | 97.3595 | 312 | 1460 | 312 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 23.1444 | 17.6107 | 33.7493 | 43.2911 | 370 | 1731 | 649 | 1274 | 1040 | 81.6327 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 29.6245 | 17.6158 | 93.0702 | 66.7638 | 2023 | 9461 | 2122 | 158 | 138 | 87.3418 | |
| ckim-vqsr | SNP | tv | map_l150_m0_e0 | homalt | 29.9616 | 17.6205 | 100.0000 | 94.7814 | 234 | 1094 | 234 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l150_m2_e0 | * | 28.5714 | 17.6471 | 75.0000 | 97.3510 | 3 | 14 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e0 | * | 28.5714 | 17.6471 | 75.0000 | 95.3488 | 3 | 14 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 29.7335 | 17.6883 | 93.2000 | 52.5617 | 101 | 470 | 233 | 17 | 16 | 94.1176 | |
| asubramanian-gatk | SNP | ti | map_l125_m0_e0 | homalt | 30.1116 | 17.7243 | 100.0000 | 92.1453 | 796 | 3695 | 796 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 23.8908 | 17.7515 | 36.5217 | 59.5070 | 30 | 139 | 42 | 73 | 70 | 95.8904 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 27.9590 | 17.7515 | 65.7895 | 60.0000 | 30 | 139 | 25 | 13 | 12 | 92.3077 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 19.2870 | 17.7778 | 21.0762 | 81.7661 | 24 | 111 | 47 | 176 | 45 | 25.5682 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 21.8945 | 17.7898 | 28.4615 | 75.2538 | 132 | 610 | 111 | 279 | 3 | 1.0753 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 30.3030 | 17.8571 | 100.0000 | 73.6842 | 5 | 23 | 5 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 29.2460 | 17.8797 | 80.2817 | 70.2306 | 113 | 519 | 114 | 28 | 24 | 85.7143 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 27.4282 | 17.8862 | 58.7940 | 51.5815 | 44 | 202 | 117 | 82 | 82 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 30.3571 | 17.8947 | 100.0000 | 94.0767 | 17 | 78 | 17 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | HG002compoundhet | het | 21.2896 | 17.8947 | 26.2741 | 51.2425 | 153 | 702 | 531 | 1490 | 935 | 62.7517 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 30.0306 | 17.9045 | 93.0510 | 37.7282 | 851 | 3902 | 857 | 64 | 62 | 96.8750 | |
| asubramanian-gatk | SNP | * | map_l250_m1_e0 | * | 30.3884 | 17.9313 | 99.5388 | 98.3683 | 1295 | 5927 | 1295 | 6 | 1 | 16.6667 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 28.2151 | 17.9394 | 66.0465 | 75.3157 | 148 | 677 | 142 | 73 | 45 | 61.6438 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 28.2151 | 17.9394 | 66.0465 | 75.3157 | 148 | 677 | 142 | 73 | 45 | 61.6438 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 28.0702 | 17.9775 | 64.0000 | 78.6325 | 16 | 73 | 16 | 9 | 8 | 88.8889 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 16.5275 | 18.0000 | 15.2778 | 83.3333 | 9 | 41 | 11 | 61 | 15 | 24.5902 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 24.7191 | 18.0328 | 39.2857 | 73.0769 | 22 | 100 | 22 | 34 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 29.7662 | 18.0480 | 84.8708 | 63.2791 | 233 | 1058 | 230 | 41 | 31 | 75.6098 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 27.8246 | 18.0645 | 60.5263 | 85.0394 | 28 | 127 | 23 | 15 | 3 | 20.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 21.5835 | 18.1202 | 26.6833 | 26.4895 | 214 | 967 | 214 | 588 | 544 | 92.5170 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 28.5833 | 18.1471 | 67.2691 | 61.6333 | 713 | 3216 | 670 | 326 | 173 | 53.0675 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 23.1120 | 18.1529 | 31.7992 | 75.7484 | 171 | 771 | 152 | 326 | 3 | 0.9202 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 18.1538 | 0.0000 | 0.0000 | 118 | 532 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 18.1590 | 0.0000 | 0.0000 | 217 | 978 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m0_e0 | * | 29.6296 | 18.1818 | 80.0000 | 78.5714 | 2 | 9 | 12 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m1_e0 | * | 30.1075 | 18.1818 | 87.5000 | 86.8852 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e0 | * | 30.1075 | 18.1818 | 87.5000 | 88.4058 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e1 | * | 30.1075 | 18.1818 | 87.5000 | 88.7324 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m0_e0 | hetalt | 26.6667 | 18.1818 | 50.0000 | 99.5943 | 2 | 9 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 18.1818 | 0.0000 | 0.0000 | 2 | 9 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m0_e0 | * | 23.5294 | 18.1818 | 33.3333 | 68.4211 | 2 | 9 | 2 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m1_e0 | * | 25.0000 | 18.1818 | 40.0000 | 78.2609 | 2 | 9 | 2 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e0 | * | 23.5294 | 18.1818 | 33.3333 | 81.8182 | 2 | 9 | 2 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e1 | * | 23.5294 | 18.1818 | 33.3333 | 81.8182 | 2 | 9 | 2 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 28.2828 | 18.1818 | 63.6364 | 88.8889 | 2 | 9 | 7 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m1_e0 | * | 30.7692 | 18.1818 | 100.0000 | 97.8947 | 2 | 9 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e0 | * | 30.7692 | 18.1818 | 100.0000 | 98.0198 | 2 | 9 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e1 | * | 30.7692 | 18.1818 | 100.0000 | 98.0198 | 2 | 9 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 24.1770 | 18.1983 | 36.0063 | 77.7972 | 1107 | 4976 | 1374 | 2442 | 776 | 31.7772 | |