PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33351-33400 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D16_PLUS | decoy | * | 22.2222 | 16.6667 | 33.3333 | 98.5915 | 1 | 5 | 1 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 28.0702 | 16.6667 | 88.8889 | 82.0000 | 2 | 10 | 8 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m0_e0 | * | 26.6667 | 16.6667 | 66.6667 | 96.5517 | 2 | 10 | 2 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l150_m2_e1 | * | 27.2727 | 16.6667 | 75.0000 | 97.3856 | 3 | 15 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m0_e0 | homalt | 28.5714 | 16.6667 | 100.0000 | 91.6667 | 2 | 10 | 2 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l250_m1_e0 | homalt | 28.5867 | 16.6770 | 100.0000 | 97.2814 | 268 | 1339 | 268 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | * | hetalt | 28.3581 | 16.7098 | 93.6210 | 67.5396 | 323 | 1610 | 499 | 34 | 33 | 97.0588 | |
| eyeh-varpipe | INDEL | D16_PLUS | HG002compoundhet | hetalt | 28.4846 | 16.7531 | 95.0298 | 30.9066 | 323 | 1605 | 478 | 25 | 25 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | het | 25.8366 | 16.7832 | 56.0976 | 90.6818 | 24 | 119 | 23 | 18 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | map_l125_m0_e0 | homalt | 28.7587 | 16.7942 | 100.0000 | 93.2501 | 373 | 1848 | 373 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 16.7947 | 0.0000 | 0.0000 | 306 | 1516 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 16.7981 | 0.0000 | 0.0000 | 277 | 1372 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 28.4562 | 16.8067 | 92.7350 | 41.3166 | 860 | 4257 | 868 | 68 | 64 | 94.1176 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 16.8087 | 0.0000 | 0.0000 | 217 | 1074 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | HG002compoundhet | het | 14.0448 | 16.8269 | 12.0521 | 71.7051 | 35 | 173 | 37 | 270 | 38 | 14.0741 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 21.1214 | 16.8539 | 28.2828 | 55.6054 | 30 | 148 | 28 | 71 | 27 | 38.0282 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 21.8978 | 16.8539 | 31.2500 | 56.7568 | 15 | 74 | 15 | 33 | 19 | 57.5758 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 26.0012 | 16.8539 | 56.8627 | 86.1789 | 30 | 148 | 29 | 22 | 16 | 72.7273 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.6825 | 16.8919 | 26.6667 | 71.6981 | 25 | 123 | 20 | 55 | 29 | 52.7273 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 20.0419 | 16.9448 | 24.5243 | 50.5230 | 467 | 2289 | 464 | 1428 | 1427 | 99.9300 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 16.9450 | 0.0000 | 0.0000 | 274 | 1343 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 16.9454 | 0.0000 | 0.0000 | 152 | 745 | 0 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l250_m2_e0 | * | 28.9950 | 16.9674 | 99.5927 | 98.5624 | 489 | 2393 | 489 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 26.6490 | 16.9856 | 61.8182 | 56.0000 | 71 | 347 | 68 | 42 | 32 | 76.1905 | |
| eyeh-varpipe | INDEL | D16_PLUS | HG002complexvar | hetalt | 28.7793 | 17.0040 | 93.5897 | 61.3861 | 42 | 205 | 219 | 15 | 15 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 24.1692 | 17.0213 | 41.6667 | 74.4681 | 8 | 39 | 5 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002compoundhet | het | 28.9364 | 17.0213 | 96.4581 | 27.6068 | 8 | 39 | 817 | 30 | 30 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | * | 27.1540 | 17.0492 | 66.6667 | 90.7063 | 52 | 253 | 50 | 25 | 2 | 8.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 17.0507 | 0.0000 | 0.0000 | 37 | 180 | 0 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l250_m0_e0 | homalt | 29.3080 | 17.1701 | 100.0000 | 98.5248 | 108 | 521 | 108 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l250_m1_e0 | homalt | 29.3121 | 17.1729 | 100.0000 | 97.3637 | 147 | 709 | 147 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l250_m2_e1 | * | 29.3068 | 17.1811 | 99.6024 | 98.5560 | 501 | 2415 | 501 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 17.3077 | 0.0000 | 0.0000 | 9 | 43 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdup | hetalt | 0.0000 | 17.3077 | 0.0000 | 0.0000 | 9 | 43 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 29.5238 | 17.3184 | 100.0000 | 39.4737 | 31 | 148 | 46 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 25.7297 | 17.3354 | 49.8866 | 62.4361 | 229 | 1092 | 220 | 221 | 16 | 7.2398 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 28.7770 | 17.3913 | 83.3333 | 89.0909 | 4 | 19 | 5 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 28.8288 | 17.3913 | 84.2105 | 81.9048 | 16 | 76 | 16 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m1_e0 | het | 26.6667 | 17.3913 | 57.1429 | 93.5484 | 8 | 38 | 8 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 28.0702 | 17.3913 | 72.7273 | 97.8887 | 8 | 38 | 8 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 19.5122 | 17.3913 | 22.2222 | 55.5556 | 8 | 38 | 8 | 28 | 27 | 96.4286 | |
| anovak-vg | SNP | ti | HG002complexvar | hetalt | 0.0000 | 17.3913 | 0.0000 | 0.0000 | 36 | 171 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 17.4089 | 0.0000 | 0.0000 | 43 | 204 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_siren | hetalt | 28.1292 | 17.4089 | 73.2143 | 97.8495 | 43 | 204 | 41 | 15 | 8 | 53.3333 | |
| asubramanian-gatk | SNP | * | map_l125_m0_e0 | homalt | 29.6663 | 17.4166 | 100.0000 | 92.5404 | 1169 | 5543 | 1169 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l250_m0_e0 | homalt | 29.6875 | 17.4312 | 100.0000 | 98.3895 | 76 | 360 | 76 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l250_m1_e0 | het | 29.7001 | 17.4594 | 99.3631 | 98.7032 | 312 | 1475 | 312 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.9766 | 17.5155 | 20.7036 | 55.4928 | 368 | 1733 | 359 | 1375 | 1359 | 98.8364 | |
| asubramanian-gatk | SNP | ti | map_l250_m2_e0 | homalt | 29.8638 | 17.5529 | 100.0000 | 97.3580 | 307 | 1442 | 307 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l150_m0_e0 | * | 29.8574 | 17.5611 | 99.5924 | 97.2219 | 733 | 3441 | 733 | 3 | 1 | 33.3333 | |