PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33301-33350 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 25.0146 | 16.3556 | 53.1570 | 69.3516 | 1034 | 5288 | 985 | 868 | 794 | 91.4747 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 25.0146 | 16.3556 | 53.1570 | 69.3516 | 1034 | 5288 | 985 | 868 | 794 | 91.4747 | |
| asubramanian-gatk | SNP | * | map_l250_m2_e1 | homalt | 28.1922 | 16.4091 | 100.0000 | 97.5636 | 446 | 2272 | 446 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 16.4164 | 0.0000 | 0.0000 | 317 | 1614 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 16.4164 | 0.0000 | 0.0000 | 317 | 1614 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 21.6154 | 16.4179 | 31.6279 | 50.5178 | 88 | 448 | 136 | 294 | 156 | 53.0612 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 23.1772 | 16.4208 | 39.3809 | 42.5111 | 345 | 1756 | 458 | 705 | 585 | 82.9787 | |
| asubramanian-gatk | SNP | tv | map_l250_m0_e0 | het | 28.2282 | 16.4336 | 100.0000 | 99.2644 | 94 | 478 | 94 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | * | hetalt | 0.0000 | 16.4511 | 0.0000 | 0.0000 | 318 | 1615 | 0 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l250_m0_e0 | * | 28.2828 | 16.4706 | 100.0000 | 99.1823 | 126 | 639 | 126 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 16.4706 | 0.0000 | 0.0000 | 14 | 71 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 16.4938 | 0.0000 | 0.0000 | 318 | 1610 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 16.4948 | 0.0000 | 0.0000 | 16 | 81 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 23.0092 | 16.5049 | 37.9747 | 64.0909 | 34 | 172 | 30 | 49 | 32 | 65.3061 | |
| gduggal-snapvard | INDEL | I6_15 | HG002compoundhet | * | 20.6071 | 16.5147 | 27.3957 | 31.7261 | 1449 | 7325 | 1478 | 3917 | 3324 | 84.8609 | |
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | hetalt | 0.0000 | 16.5303 | 0.0000 | 0.0000 | 202 | 1020 | 0 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l250_m0_e0 | homalt | 28.4444 | 16.5803 | 100.0000 | 98.7688 | 32 | 161 | 32 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 28.2195 | 16.6235 | 93.3071 | 68.0905 | 321 | 1610 | 474 | 34 | 33 | 97.0588 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 28.2195 | 16.6235 | 93.3071 | 68.0905 | 321 | 1610 | 474 | 34 | 33 | 97.0588 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 23.8291 | 16.6493 | 41.8960 | 68.3446 | 160 | 801 | 137 | 190 | 58 | 30.5263 | |
| gduggal-snapplat | INDEL | D6_15 | map_l250_m0_e0 | * | 16.6667 | 100.0000 | 1 | 5 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | func_cds | het | 25.0000 | 16.6667 | 50.0000 | 50.0000 | 4 | 20 | 4 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 21.4286 | 16.6667 | 30.0000 | 64.2857 | 4 | 20 | 3 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 28.5714 | 16.6667 | 100.0000 | 0.0000 | 2 | 10 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e1 | * | 27.2727 | 16.6667 | 75.0000 | 95.4023 | 3 | 15 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | func_cds | homalt | 28.5714 | 16.6667 | 100.0000 | 50.0000 | 2 | 10 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | homalt | 28.5714 | 16.6667 | 100.0000 | 0.0000 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m0_e0 | homalt | 28.5714 | 16.6667 | 100.0000 | 86.4865 | 1 | 5 | 5 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 24.4898 | 16.6667 | 46.1538 | 69.0476 | 6 | 30 | 6 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.0000 | 16.6667 | 25.0000 | 97.2973 | 1 | 5 | 1 | 3 | 0 | 0.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m0_e0 | * | 22.2222 | 16.6667 | 33.3333 | 76.9231 | 1 | 5 | 1 | 2 | 2 | 100.0000 | |
| anovak-vg | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 23.3857 | 16.6667 | 39.1813 | 74.7788 | 69 | 345 | 67 | 104 | 102 | 98.0769 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | * | 27.2727 | 16.6667 | 75.0000 | 81.8182 | 1 | 5 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m1_e0 | het | 28.5714 | 16.6667 | 100.0000 | 97.0297 | 3 | 15 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e0 | het | 28.5714 | 16.6667 | 100.0000 | 97.3684 | 3 | 15 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e1 | het | 28.5714 | 16.6667 | 100.0000 | 97.3684 | 3 | 15 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m1_e0 | het | 28.5714 | 16.6667 | 100.0000 | 98.6667 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e0 | het | 28.5714 | 16.6667 | 100.0000 | 98.7342 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e1 | het | 28.5714 | 16.6667 | 100.0000 | 98.7342 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m0_e0 | homalt | 28.5714 | 16.6667 | 100.0000 | 97.8723 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m0_e0 | * | 28.5714 | 16.6667 | 100.0000 | 95.0000 | 1 | 5 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | map_l125_m0_e0 | homalt | 25.0000 | 16.6667 | 50.0000 | 93.1034 | 1 | 5 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 27.7778 | 16.6667 | 83.3333 | 95.4545 | 5 | 25 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 27.7778 | 16.6667 | 83.3333 | 96.3190 | 5 | 25 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | het | 27.7778 | 16.6667 | 83.3333 | 96.3415 | 5 | 25 | 5 | 1 | 1 | 100.0000 | |