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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
33251-33300 / 86044 show all
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
15.3846
0.0000
0.0000
844000
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
18.7853
15.3926
24.0964
85.0898
149819240756119
15.7407
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
15.4153
0.0000
0.0000
1931059000
gduggal-bwavardINDELD1_5HG002compoundhet*
18.6118
15.4230
23.4630
68.0839
188710348178658265576
95.7089
gduggal-snapplatINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
26.5124
15.4269
94.2105
53.3742
36520013582217
77.2727
ciseli-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
25.2427
15.4762
68.4211
87.0748
2614226128
66.6667
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
17.7419
15.4930
20.7547
46.1929
22120228484
100.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
24.3587
15.4953
56.9132
61.6995
18399817713497
72.3881
ghariani-varprowlINDELD1_5HG002compoundhet*
18.5546
15.5456
23.0082
71.0145
190210333188062916060
96.3281
ciseli-customINDELI1_5map_l250_m2_e0homalt
25.4545
15.5556
70.0000
98.0198
738731
33.3333
gduggal-snapvardINDELI6_15HG002compoundhethetalt
0.0000
15.5829
0.0000
0.0000
13307205000
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
26.6884
15.5852
92.8021
65.3298
25713923612827
96.4286
gduggal-snapvardINDELI6_15*hetalt
0.0000
15.6042
0.0000
0.0000
13347215000
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
26.8433
15.6323
94.9091
54.3189
26714412611410
71.4286
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_51to200*
17.1400
15.6592
18.9300
50.8097
329177232213791373
99.5649
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
26.9886
15.7699
93.5135
61.5385
25513623462423
95.8333
anovak-vgSNP*HG002complexvarhetalt
0.0000
15.8065
0.0000
0.0000
49261000
anovak-vgSNPtvHG002complexvarhetalt
0.0000
15.8065
0.0000
0.0000
49261000
anovak-vgSNPti*hetalt
0.0000
15.8076
0.0000
0.0000
92490000
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
22.8070
15.8537
40.6250
85.9649
1369131912
63.1579
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
22.4138
15.8537
38.2353
86.4000
1369132113
61.9048
anovak-vgSNPtiHG002compoundhethetalt
0.0000
15.8895
0.0000
0.0000
92487000
ghariani-varprowlINDELD16_PLUSHG002compoundhet*
18.0085
15.8906
20.7778
37.7809
372196937414261417
99.3689
asubramanian-gatkSNPtvmap_l250_m1_e0*
27.4267
15.9048
99.5272
98.5741
421222642120
0.0000
anovak-vgINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
23.7087
15.9091
46.5116
54.5317
133703140161125
77.6398
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
15.9091
0.0000
0.0000
737000
gduggal-bwaplatINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
27.4510
15.9091
100.0000
99.6394
737700
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
27.1199
15.9420
90.7489
71.4824
1437542062119
90.4762
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
18.8065
16.0000
22.8070
67.0520
1263134441
93.1818
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
16.0000
0.0000
0.0000
421000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
27.3019
16.0247
92.1569
56.7063
1045452352018
90.0000
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
22.5181
16.0393
37.7778
69.3878
985138514043
30.7143
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
19.1784
16.0456
23.8312
52.5433
2111104209668663
99.2515
ciseli-customINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
25.7093
16.0550
64.4860
89.9813
70366693823
60.5263
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
23.2825
16.1074
41.9847
51.3011
24125557663
82.8947
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
24.2451
16.1226
48.8616
65.3414
5632929558584571
97.7740
anovak-vgINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10het
24.9332
16.1290
54.9020
84.7305
105228238
34.7826
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
16.1412
0.0000
0.0000
128665000
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
22.9777
16.1847
39.5973
75.5015
31916522954506
1.3333
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
22.9777
16.1847
39.5973
75.5015
31916522954506
1.3333
gduggal-snapplatINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
25.0503
16.2037
55.1724
73.1481
3518132268
30.7692
ciseli-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
25.0000
16.2162
54.5455
77.0833
631654
80.0000
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
18.1575
16.2675
20.5446
86.8404
16383916664234
5.2960
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
22.3230
16.2712
35.5425
80.2066
43222236061099407
37.0337
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
16.2975
0.0000
0.0000
103529000
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
23.0412
16.2978
39.3035
77.1850
8141679122119
97.5410
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
24.6578
16.3033
50.5747
64.7773
4862495484473460
97.2516
asubramanian-gatkSNP*map_l250_m2_e0homalt
28.0410
16.3068
100.0000
97.5677
438224843800
ciseli-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
25.1673
16.3154
55.0168
69.5072
8674447817668604
90.4192
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
26.6325
16.3265
72.2222
65.3846
8411355
100.0000