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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33151-33200 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 17.0866 | 13.7546 | 22.5490 | 86.7704 | 37 | 232 | 23 | 79 | 9 | 11.3924 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 22.2368 | 13.7681 | 57.7726 | 41.9919 | 57 | 357 | 249 | 182 | 181 | 99.4505 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 20.3390 | 13.7931 | 38.7097 | 86.2222 | 12 | 75 | 12 | 19 | 18 | 94.7368 | |
| jpowers-varprowl | INDEL | * | HG002compoundhet | * | 14.0649 | 13.8284 | 14.3095 | 60.1145 | 4143 | 25817 | 4126 | 24708 | 24326 | 98.4539 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 8.8851 | 13.8889 | 6.5319 | 87.2673 | 40 | 248 | 42 | 601 | 6 | 0.9983 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 24.2259 | 13.9254 | 93.0657 | 54.5455 | 1165 | 7201 | 1275 | 95 | 89 | 93.6842 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 23.5294 | 13.9276 | 75.7576 | 73.7052 | 50 | 309 | 50 | 16 | 14 | 87.5000 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 23.5849 | 13.9276 | 76.9231 | 73.7903 | 50 | 309 | 50 | 15 | 14 | 93.3333 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 15.3418 | 13.9640 | 17.0213 | 57.0776 | 31 | 191 | 32 | 156 | 154 | 98.7179 | |
| asubramanian-gatk | SNP | tv | map_l250_m2_e0 | homalt | 24.5318 | 13.9808 | 100.0000 | 97.9454 | 131 | 806 | 131 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 23.8140 | 14.0000 | 79.6460 | 57.8358 | 91 | 559 | 90 | 23 | 17 | 73.9130 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 14.0515 | 0.0000 | 0.0000 | 240 | 1468 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 15.7742 | 14.0845 | 17.9245 | 45.0777 | 20 | 122 | 19 | 87 | 86 | 98.8506 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 22.7618 | 14.1194 | 58.6792 | 46.6264 | 97 | 590 | 311 | 219 | 217 | 99.0868 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 14.1589 | 0.0000 | 0.0000 | 335 | 2031 | 0 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 24.4790 | 14.1603 | 90.2314 | 68.8301 | 258 | 1564 | 351 | 38 | 31 | 81.5789 | |
| asubramanian-gatk | SNP | tv | map_l250_m2_e1 | homalt | 24.8148 | 14.1649 | 100.0000 | 97.9315 | 134 | 812 | 134 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 24.8175 | 14.2061 | 98.0769 | 63.8889 | 51 | 308 | 51 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 23.2024 | 14.2344 | 62.7119 | 73.6999 | 119 | 717 | 111 | 66 | 9 | 13.6364 | |
| gduggal-snapplat | INDEL | C1_5 | HG002complexvar | * | 16.6667 | 14.2857 | 20.0000 | 81.4815 | 1 | 6 | 1 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 14.2857 | 0.0000 | 84.2105 | 1 | 6 | 0 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | homalt | 25.0000 | 14.2857 | 100.0000 | 98.4127 | 1 | 6 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e0 | homalt | 25.0000 | 14.2857 | 100.0000 | 98.5075 | 1 | 6 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m0_e0 | * | 21.0526 | 14.2857 | 40.0000 | 91.8033 | 4 | 24 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e1 | * | 22.2222 | 14.2857 | 50.0000 | 94.2857 | 4 | 24 | 4 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l100_m0_e0 | hetalt | 25.0000 | 14.2857 | 100.0000 | 80.0000 | 2 | 12 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C1_5 | HG002complexvar | * | 14.2857 | 100.0000 | 1 | 6 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | HG002complexvar | het | 14.2857 | 100.0000 | 1 | 6 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m0_e0 | * | 22.8571 | 14.2857 | 57.1429 | 94.9640 | 4 | 24 | 4 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | I6_15 | map_l150_m1_e0 | homalt | 25.0000 | 14.2857 | 100.0000 | 97.2222 | 1 | 6 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e0 | homalt | 25.0000 | 14.2857 | 100.0000 | 97.6744 | 1 | 6 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m1_e0 | * | 25.0000 | 14.2857 | 100.0000 | 99.4220 | 1 | 6 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | C6_15 | * | * | 20.0000 | 14.2857 | 33.3333 | 95.4887 | 1 | 6 | 2 | 4 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | C6_15 | * | het | 16.6667 | 14.2857 | 20.0000 | 78.2609 | 1 | 6 | 1 | 4 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l100_m0_e0 | hetalt | 25.0000 | 14.2857 | 100.0000 | 97.2973 | 2 | 12 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 20.7254 | 14.2857 | 37.7358 | 50.4673 | 5 | 30 | 20 | 33 | 29 | 87.8788 | |
| anovak-vg | INDEL | I6_15 | tech_badpromoters | het | 25.0000 | 14.2857 | 100.0000 | 40.0000 | 1 | 6 | 3 | 0 | 0 | ||
| anovak-vg | SNP | * | segdup | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | segdup | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | map_siren | homalt | 19.3548 | 14.2857 | 30.0000 | 87.1795 | 3 | 18 | 3 | 7 | 4 | 57.1429 | |
| ckim-isaac | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 24.8195 | 14.3396 | 92.2078 | 60.3093 | 76 | 454 | 71 | 6 | 5 | 83.3333 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 24.7522 | 14.3959 | 88.2086 | 64.5213 | 392 | 2331 | 389 | 52 | 41 | 78.8462 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 24.8881 | 14.3987 | 91.6667 | 67.0000 | 91 | 541 | 121 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 24.9746 | 14.4074 | 93.6975 | 63.9939 | 186 | 1105 | 223 | 15 | 14 | 93.3333 | |