PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33101-33150 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D16_PLUS | HG002compoundhet | homalt | 0.4762 | 12.5000 | 0.2427 | 19.8444 | 1 | 7 | 2 | 822 | 821 | 99.8783 | |
| ckim-vqsr | SNP | * | map_l100_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.1308 | 2 | 14 | 2 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.1308 | 2 | 14 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 20.1055 | 12.5225 | 50.9714 | 65.7132 | 488 | 3409 | 446 | 429 | 399 | 93.0070 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002complexvar | hetalt | 21.9016 | 12.5373 | 86.5385 | 70.1149 | 42 | 293 | 45 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 22.0793 | 12.5407 | 92.2309 | 57.4591 | 1194 | 8327 | 1294 | 109 | 93 | 85.3211 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 12.5828 | 0.0000 | 0.0000 | 19 | 132 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 16.8844 | 12.6126 | 25.5319 | 75.5463 | 56 | 388 | 60 | 175 | 113 | 64.5714 | |
| asubramanian-gatk | SNP | tv | map_l250_m1_e0 | homalt | 22.5907 | 12.7336 | 100.0000 | 97.9792 | 109 | 747 | 109 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | HG002compoundhet | het | 8.3916 | 12.7660 | 6.2500 | 77.0883 | 6 | 41 | 6 | 90 | 75 | 83.3333 | |
| ciseli-custom | INDEL | I16_PLUS | segdup | * | 21.9321 | 12.7660 | 77.7778 | 96.3415 | 6 | 41 | 7 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e1 | hetalt | 21.2999 | 12.8788 | 61.5385 | 98.2562 | 17 | 115 | 16 | 10 | 5 | 50.0000 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | hetalt | 21.5440 | 12.9032 | 65.2174 | 98.3076 | 16 | 108 | 15 | 8 | 5 | 62.5000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | hetalt | 22.2222 | 12.9032 | 80.0000 | 93.5897 | 4 | 27 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 17.1882 | 12.9125 | 25.6972 | 75.4883 | 90 | 607 | 129 | 373 | 191 | 51.2064 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 22.8155 | 12.9477 | 95.9184 | 63.1579 | 47 | 316 | 47 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 21.6364 | 12.9630 | 65.3846 | 59.3750 | 14 | 94 | 17 | 9 | 9 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 22.9356 | 12.9887 | 97.9381 | 34.8993 | 103 | 690 | 95 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 20.7836 | 13.0081 | 51.6667 | 91.2281 | 32 | 214 | 31 | 29 | 15 | 51.7241 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 21.2389 | 13.0435 | 57.1429 | 46.1538 | 3 | 20 | 4 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.8571 | 13.0435 | 92.3077 | 56.6667 | 12 | 80 | 12 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 23.0769 | 13.0435 | 100.0000 | 66.6667 | 3 | 20 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 13.1148 | 0.0000 | 0.0000 | 8 | 53 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | * | 21.4346 | 13.1398 | 58.1315 | 77.3688 | 172 | 1137 | 168 | 121 | 93 | 76.8595 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 20.8955 | 13.2075 | 50.0000 | 55.5556 | 7 | 46 | 8 | 8 | 2 | 25.0000 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.5715 | 13.2114 | 46.4481 | 71.1356 | 65 | 427 | 85 | 98 | 77 | 78.5714 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 22.9299 | 13.2353 | 85.7143 | 26.3158 | 9 | 59 | 12 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 23.2343 | 13.2530 | 94.1176 | 59.5238 | 11 | 72 | 16 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.1517 | 13.2826 | 66.6667 | 82.1918 | 157 | 1025 | 156 | 78 | 60 | 76.9231 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.2306 | 13.2826 | 68.1223 | 82.0392 | 157 | 1025 | 156 | 73 | 59 | 80.8219 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 16.3569 | 13.3333 | 21.1538 | 62.5899 | 10 | 65 | 11 | 41 | 40 | 97.5610 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m1_e0 | * | 22.9885 | 13.3333 | 83.3333 | 78.5714 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e0 | * | 22.9885 | 13.3333 | 83.3333 | 81.4433 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e1 | * | 22.9885 | 13.3333 | 83.3333 | 81.6327 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 23.5294 | 13.3333 | 100.0000 | 94.4444 | 2 | 13 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l150_m1_e0 | * | 22.2222 | 13.3333 | 66.6667 | 97.7099 | 2 | 13 | 2 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 13.4043 | 0.0000 | 0.0000 | 365 | 2358 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | segdup | het | 20.0000 | 13.5135 | 38.4615 | 94.7581 | 5 | 32 | 5 | 8 | 4 | 50.0000 | |
| asubramanian-gatk | SNP | tv | map_l150_m0_e0 | homalt | 23.8727 | 13.5542 | 100.0000 | 95.9331 | 180 | 1148 | 180 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 13.6000 | 0.0000 | 0.0000 | 17 | 108 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | hetalt | 22.4330 | 13.6000 | 64.0000 | 98.2970 | 17 | 108 | 16 | 9 | 5 | 55.5556 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 23.7730 | 13.6201 | 93.3884 | 56.4748 | 38 | 241 | 113 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 22.6415 | 13.6364 | 66.6667 | 53.8462 | 9 | 57 | 12 | 6 | 6 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 22.6415 | 13.6364 | 66.6667 | 97.8774 | 6 | 38 | 6 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 21.2269 | 13.6601 | 47.5862 | 87.4784 | 209 | 1321 | 207 | 228 | 185 | 81.1404 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 21.2269 | 13.6601 | 47.5862 | 87.4784 | 209 | 1321 | 207 | 228 | 185 | 81.1404 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 13.6768 | 0.0000 | 0.0000 | 523 | 3301 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 23.9090 | 13.7056 | 93.5673 | 71.9672 | 162 | 1020 | 160 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 23.8185 | 13.7255 | 90.0000 | 71.4286 | 7 | 44 | 9 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.2461 | 13.7546 | 75.0000 | 92.9078 | 37 | 232 | 30 | 10 | 5 | 50.0000 | |